Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E21
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF039047-12|AAM15590.1|  226|Caenorhabditis elegans Hypothetical...    27   5.8  
AB095019-1|BAC22611.1|  822|Caenorhabditis elegans ubiquitin-spe...    27   5.8  
AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylat...    27   7.6  

>Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical
           protein T01C3.8 protein.
          Length = 541

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 99  DGVDRLLREFDAHRLRFVLAFHRSASAGSLS 191
           D + RL + F++   RF+ A+H S+S  SL+
Sbjct: 238 DSLGRLAQTFESSLTRFIFAYHFSSSVASLT 268


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 345  DFSNRILIVAVSGHVRLNDVDAAHFVCREMWTFAAAVGGS 226
            D  N+ ++ A S  V  N  D A   CRE +  A A GGS
Sbjct: 1679 DSKNQPIVPATSTLVMCNCGDGARTRCREKYHSATACGGS 1718


>Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical
           protein F38B7.5 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 366 SWWIWGVDFSNRILIVAVSGHVRLNDV 286
           SWWI GV   + I   AV  H++ N++
Sbjct: 613 SWWITGVQSHHMIFREAVGKHLKKNEL 639


>AF039047-12|AAM15590.1|  226|Caenorhabditis elegans Hypothetical
           protein K11D12.12 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 293 FNRTCPETA-TISIRFEKSTPQIHQEKKTRKI 385
           ++ + P T   I++R+EK TP    E KT++I
Sbjct: 86  YSVSLPRTKRVIALRYEKETPSTSSETKTKRI 117


>AB095019-1|BAC22611.1|  822|Caenorhabditis elegans
           ubiquitin-specific protease protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 366 SWWIWGVDFSNRILIVAVSGHVRLNDV 286
           SWWI GV   + I   AV  H++ N++
Sbjct: 613 SWWITGVQSHHMIFREAVGKHLKKNEL 639


>AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylating
           with usp/ubp andotu domains protein 2 protein.
          Length = 551

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 366 SWWIWGVDFSNRILIVAVSGHVRLND 289
           SWW+ GV+  + I   AV  H++ N+
Sbjct: 340 SWWLTGVESHHMIFREAVGKHLKKNE 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,323,705
Number of Sequences: 27780
Number of extensions: 112891
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)