Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E20
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...   123   2e-29
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...   119   3e-28
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   0.80 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   2.4  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   3.2  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   5.6  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   9.8  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score =  123 bits (296), Expect = 2e-29
 Identities = 59/102 (57%), Positives = 73/102 (71%)
 Frame = +3

Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 333 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
           E +RL + KKTV+R YGG L    VK RIVRAFLIE QKIVK
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score =  119 bits (286), Expect = 3e-28
 Identities = 57/102 (55%), Positives = 72/102 (70%)
 Frame = +3

Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 333 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
           E +RL + +K V+R YGG L    VK RIVRAFLIE QKIVK
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 425 SDNALLDTFMAEDTTINTFH 366
           SDNA +DT ++ED TIN  H
Sbjct: 83  SDNAAIDTDISEDETINQRH 102


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 174 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 281
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 174 RRRLSYNTKSN-QRRIVRTPGGRLVY 248
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 104 VV*YSLHIFYFIFQLENGAAAYIQATTVVQHKIKSKKNSKDTG--WPLGLSVCK 259
           +V   L +  ++ +  + AAA+ Q T + QH  +   + + TG   P+   VCK
Sbjct: 72  IVLLHLQVLLYLVRDHDPAAAFKQQTELAQHLYREFSSGRCTGVHLPVLFIVCK 125


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 15  ILCVCELLY*NLTVILQEIWKTKATTS*FEWCNTLYIYFISYFSLKMVQRLTFRRRLSY 191
           +LCV  +L  NL  I + I+         +WC  L   F+ + S   +    F  +L +
Sbjct: 74  VLCVDTILPANLQTIAKRIFSLVLLPPLNDWCKQLRDAFLRFVSQPSICPTDFPLKLFF 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,655
Number of Sequences: 5004
Number of extensions: 44713
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)