Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E20
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 125 2e-29
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 125 2e-29
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 124 5e-29
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 3.3
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 28 4.3
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 28 5.7
01_05_0589 + 23459847-23460344,23460493-23461296 27 7.5
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088... 27 10.0
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 27 10.0
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 125 bits (302), Expect = 2e-29
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 333 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
E RSRL ++TV R YGGVL V++RI+RAFL+E QKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 125 bits (302), Expect = 2e-29
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 333 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
E RSRL ++TV R YGGVL V++RI+RAFL+E QKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 124 bits (299), Expect = 5e-29
Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 333 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
E RSRL ++TV R YGGVL V++RI+RAFL+E QKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 186 SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 341
S N NQ+R+V+ G + +KP+++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 143 QLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPWYPAS 322
QL + A ++A V+ K KK +DT L S+ +++ P WS Q++ P+S
Sbjct: 1062 QLRDAAQPVVKAFQVLYWK---KKGYEDTLRSLRASLASRSKSQPASWSQQDKDSSTPSS 1118
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 27.9 bits (59), Expect = 5.7
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 56 NLTRNLENKSNYQLI*VV*YSLHIFYFIFQ-LENGAAAYIQATTVVQHKIKSKKNS-KDT 229
NL ++L N N L+ + +H+ IFQ L++GA V +I S +
Sbjct: 427 NLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEVQSPRIHYVHPSWFEA 486
Query: 230 GWPLGLSVCKKAQEDPKVWSV 292
G P+ L +C + + PK S+
Sbjct: 487 GKPIDLILCGSSLDQPKFRSL 507
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 346 RRERSAGLAGWIPRSLLLH*PHLGIFL 266
R +R + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>08_02_1022 +
23707993-23708528,23708620-23708706,23708807-23708863,
23708955-23709261,23709545-23709631,23709720-23709767
Length = 373
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 341 GTFSRSSWLDTTEFALALTTPWDLLGLFYILINQAA 234
G + + SWL FA+ALT + L+ +LI Q A
Sbjct: 22 GVYLQRSWLVLLMFAVALTPTYVLMEDLLLLIGQPA 57
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 349 QRRERSAGLAGWIPRSLLLH*PHLGIFL 266
+ +ER LA W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,181
Number of Sequences: 37544
Number of extensions: 284064
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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