Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E20
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          54   8e-08
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 30   1.1  
SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)                29   1.9  
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   3.3  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               28   4.4  
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.4  
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +3

Query: 324 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIV 455
           RP +   +   +KTV R YGG  C  CVK+RI+RAFLIE QKIV
Sbjct: 2   RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 170 IQATTVVQHKIKSKKNSKDTGWPLGLSV 253
           I     VQH  K+KK + DT +P+G++V
Sbjct: 45  ISGEYAVQHSCKNKKETIDTDYPIGMAV 72


>SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)
          Length = 339

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 196 VLYDSRRLNVSRCTIFKLKYEIKYM 122
           VLYD   +NV  C +FK+ Y++ Y+
Sbjct: 287 VLYDMPYVNVKYCRVFKVLYDMPYV 311



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 196 VLYDSRRLNVSRCTIFKLKYEIKYM 122
           VLYD   +NV  C +FK+ Y++ Y+
Sbjct: 304 VLYDMPYVNVKYCRVFKVLYDMPYV 328


>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 54  VILQEIWKT--KATTS*FEWCNTLYIYFISY-FSLKMVQRLTFRRRL-SYNTKSNQRRIV 221
           V ++E W+   +A TS  EW + LY+ FI Y  +   V R T  R L  Y        I+
Sbjct: 209 VTIEEKWQKVKEAVTSPLEWNSPLYVNFIDYEKAFDSVDRQTLWRLLRHYGVPEKITNII 268

Query: 222 R 224
           R
Sbjct: 269 R 269


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 177 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 266
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +2

Query: 146 LENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 310
           ++  ++AYI  T+  + K+K+K     T  P    V K A E+ K  + +++ P+
Sbjct: 496 VKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550


>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 413 LLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEFALALTTPW 276
           L+D  + + +  +  HCF+T+  T T ++ S   T  F L   +PW
Sbjct: 542 LIDELVKQSSCPSRAHCFITMTTTQTSTKISIAPTNTFFL---SPW 584


>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 258 LHTDKPSGHPVSLLFFFDLI 199
           LHT +P+GHP  ++  FD I
Sbjct: 5   LHTTEPTGHPCHIVCCFDAI 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,494
Number of Sequences: 59808
Number of extensions: 333235
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)