Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E20
(551 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34 pro... 132 1e-30
CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein. 127 2e-29
CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein. 127 2e-29
BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34 p... 127 2e-29
BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34 p... 127 2e-29
BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34 p... 127 2e-29
AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34 p... 127 2e-29
AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34 p... 60 5e-09
AF193849-1|AAF35177.1| 121|Homo sapiens immunoglobulin heavy ch... 30 6.2
AB095276-1|BAC80158.1| 114|Homo sapiens immunoglobulin gamma he... 29 8.2
>L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 132 bits (318), Expect = 1e-30
Identities = 67/107 (62%), Positives = 76/107 (71%), Gaps = 3/107 (2%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 326
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C KLRG++P R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGKLRGVRPVR 60
Query: 327 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQK-IVKVL 464
P RL KK V R YGG +C KCV+ RI RAFLIE QK IVKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIIVKVL 107
>CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 127 bits (307), Expect = 2e-29
Identities = 65/107 (60%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 326
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 327 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKI-VKVL 464
P RL KK V R YGG +C KCV+ RI RAFLIE QKI VKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 127 bits (307), Expect = 2e-29
Identities = 65/107 (60%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 326
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 327 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKI-VKVL 464
P RL KK V R YGG +C KCV+ RI RAFLIE QKI VKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 127 bits (307), Expect = 2e-29
Identities = 65/107 (60%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 326
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 327 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKI-VKVL 464
P RL KK V R YGG +C KCV+ RI RAFLIE QKI VKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 127 bits (307), Expect = 2e-29
Identities = 65/107 (60%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 326
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 327 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKI-VKVL 464
P RL KK V R YGG +C KCV+ RI RAFLIE QKI VKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 127 bits (307), Expect = 2e-29
Identities = 65/107 (60%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 326
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 327 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKI-VKVL 464
P RL KK V R YGG +C KCV+ RI RAFLIE QKI VKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 127 bits (307), Expect = 2e-29
Identities = 65/107 (60%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 326
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 327 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKI-VKVL 464
P RL KK V R YGG +C KCV+ RI RAFLIE QKI VKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34
protein.
Length = 45
Score = 60.1 bits (139), Expect = 5e-09
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Frame = +3
Query: 162 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CG 287
RLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG
Sbjct: 1 RLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACG 44
>AF193849-1|AAF35177.1| 121|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 121
Score = 29.9 bits (64), Expect = 6.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 72 WKTKATTS*FEWCNTLYIYFISYFSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVY 248
W KA EW +++Y + ++ + R T R SYNT S Q +R+ L +
Sbjct: 36 WVRKAPGKGMEWLSSIYSGGSTKYADSVKGRFTISRDTSYNTVSLQMHSLRSEDTALYF 94
>AB095276-1|BAC80158.1| 114|Homo sapiens immunoglobulin gamma heavy
chain protein.
Length = 114
Score = 29.5 bits (63), Expect = 8.2
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +3
Query: 72 WKTKATTS*FEWCNTLYIYFISYFSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQ 251
W +A EW + +Y I+Y++ + R T R S NT Q +R P VY
Sbjct: 29 WVRQAPGKGLEWVSIIYSAGITYYADSVKGRFTISRDNSENTLFLQMNSLR-PEDTAVY- 86
Query: 252 YVKKPKKIPRCG 287
Y + K P G
Sbjct: 87 YCARGKYSPSIG 98
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,576,514
Number of Sequences: 237096
Number of extensions: 1690161
Number of successful extensions: 7806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7799
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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