Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E20
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden...   117   6e-27
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi...   115   2e-26
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi...   114   4e-26
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap...    28   4.8  
At1g48740.1 68414.m05454 expressed protein                             28   4.8  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   8.3  
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.3  

>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
           identical to GB:Q42351, location of EST 105E2T7,
           gb|T22624
          Length = 120

 Score =  117 bits (281), Expect = 6e-27
 Identities = 59/104 (56%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
 Frame = +3

Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
           MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ  KK    P+C     +++GI   RP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 333 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+E QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
           to SP:Q42351 from [Arabidopsis thaliana]
          Length = 119

 Score =  115 bits (276), Expect = 2e-26
 Identities = 58/104 (55%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
 Frame = +3

Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ  KK    P+C     +++GI   RP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 333 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+E QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
           to 60S ribosomal protein L34 GB:P41098 [Nicotiana
           tabacum]
          Length = 120

 Score =  114 bits (274), Expect = 4e-26
 Identities = 59/104 (56%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
 Frame = +3

Query: 153 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 332
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ   K    P+C     +++GI   RPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 333 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 458
           E  RSRL   ++TV R YGGVL    V++RIVRAFL+E QKIVK
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104


>At3g56240.1 68416.m06250 copper homeostasis factor / copper
           chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 121

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 206 SKKNSKDTGWPLGLSVCKKAQEDPKVWSVQE 298
           SK   K + WP+      KA+ DPKV +V E
Sbjct: 58  SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88


>At1g48740.1 68414.m05454 expressed protein
          Length = 393

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 168 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 251
           +FR+ +S NTK + RRI+  P  G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 323  SWLDTTEFALALTTPWDLLGLFYILINQAATRCPYY 216
            SWLD    A  L   +D++G+   ++++  T+C  +
Sbjct: 5055 SWLDEINSATDLQEAFDIVGVLADVLSEGVTQCDQF 5090


>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 343 RERSAGLAGWIPRSLLLH*PHLGIFL 266
           +ERS  + GW P+ L+L  P +G FL
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVGGFL 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,920
Number of Sequences: 28952
Number of extensions: 233097
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)