Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E15
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    29   0.77 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    28   1.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   9.5  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
 Frame = +3

Query: 66  YCSANVLLQMMKLVHSV---HVYVCLVFLLSI-TEASDEA-KVDKVHVDCSTLRLGQFIC 230
           YCS  + +   K++          CL+ L  + TEA     K+ KV++  + +    F  
Sbjct: 64  YCSGQIPVANGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKVNIFLADM--DDFAA 121

Query: 231 PNPSIDQIDPDTQQFXGCIKGKEIP--SEG-EAEVECI 335
            N    ++ PD +    C+  K +P  ++G + E+ECI
Sbjct: 122 VNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIECI 159


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 472 RSNPNIPRNTDSNKAISREYPFVH 401
           R+NPNIP  T    AI + +P  H
Sbjct: 165 RTNPNIPPATSPYAAIQKAFPLFH 188


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/99 (22%), Positives = 41/99 (41%)
 Frame = -3

Query: 373 PFFVSLHIIPSAXIHSTSASPSDGISFPFIHPXNCCVSGSI*SILGFGQINCPNLNVLQS 194
           P++ +   +PS+ I S S S S  +    I   +  V+ S  S+  F      NL    S
Sbjct: 221 PYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGS 280

Query: 193 TCTLSTLASSEASVIDSKNTKHT*TCTECTSFIICNNTF 77
           T T  +   S +    + +   T   +  +SF   ++++
Sbjct: 281 TTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSY 319


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 348 IICNETKNGTFTXKLPCKWTNGYSLEIALLLSVFLGMF--GLDRFYLGYP 491
           I+  E+KN      LPC  ++ Y L ++L + +  G     L+    G P
Sbjct: 665 ILLLESKNEVIHSSLPCSKSSLYQLSLSLCIPLIEGHLRNSLEEILFGVP 714


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
 Frame = -3

Query: 538 PRNMNPRVHSFAKPIPGYPK*KRSNPNIPR-NTDSNKAISREYPFVHLHGSFXVNVP 371
           P N NP V S +   P  PK        PR N   N  +S   P +    S    VP
Sbjct: 297 PSNSNPAVMSLSSNFPSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVP 353


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 138 IPNIRRRVQNVQVSSFAITHSQNNTVLKLQMES*FTLS 25
           +PN    +     SS  I  S++N++LKLQ +  F+ S
Sbjct: 508 LPNGNDTISRSSESSSPINESESNSLLKLQSDFKFSNS 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,807
Number of Sequences: 5004
Number of extensions: 61332
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)