Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E15
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 30 1.8
09_06_0008 - 20168429-20170054 28 7.4
01_06_1372 + 36726129-36728240 28 7.4
10_01_0010 - 96784-96895,97390-97451 27 9.8
03_04_0138 - 17624099-17624141,17624619-17625166 27 9.8
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 27 9.8
01_06_0139 + 26878820-26879725 27 9.8
01_05_0654 + 23965868-23967718 27 9.8
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 291 GKEIPSEGEAEVECIXADGIICNETKNGTF 380
G ++P EGE +E +DGI+ KNG++
Sbjct: 1686 GSDLPVEGENGMEFAWSDGILLQALKNGSW 1715
>09_06_0008 - 20168429-20170054
Length = 541
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 414 YSLEIALLLSVFLGMFGLDRFYLGYPGMGLAKLCT 518
Y+ ALLL V + + +DR LG G+ L +CT
Sbjct: 200 YAAAAALLLHVPINVVLVDRLGLGIRGVALGAVCT 234
>01_06_1372 + 36726129-36728240
Length = 703
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 443 CIPGNVWIGSLLFGISWNGFSKTMYS 520
CIP V G+L+ G+ NGF+ ++
Sbjct: 400 CIPDTVTFGTLIHGLCQNGFANKAFT 425
>10_01_0010 - 96784-96895,97390-97451
Length = 57
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 452 GNVWIGSLLFGISWNGFSKTMYSG 523
G+ W+G L FG+ GF+ +++G
Sbjct: 31 GDFWVGDLRFGVGDFGFAGVIFTG 54
>03_04_0138 - 17624099-17624141,17624619-17625166
Length = 196
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 269 LCVWIYLINTWVWTNKLSQS*RTAVYMHFINFSFIGSFCNR 147
+ VW I W W N + S A ++ GSFC+R
Sbjct: 100 VAVWGSSIPWWEWDNPAAPSALRAALCRLYAEAYCGSFCSR 140
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Frame = +3
Query: 438 LSVFLGMFGLDRFYLGYPGMGLAKLCTLGFMFLGQLLHIILIAAQVVGPSXWVCLCH--- 608
L + LGM + Y PG+ + T+G+ + L IIL+ A + W L
Sbjct: 9 LPLTLGMVTVTLRYFAGPGVPRYVIATVGYAWFCSLSFIILVPADI-----WTTLTGREK 63
Query: 609 ---SILWCWSY 632
W WSY
Sbjct: 64 GGIGFFWSWSY 74
>01_06_0139 + 26878820-26879725
Length = 301
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 393 PCKWTNGYSLEIALLLSVFLGMFGLDRFYLGYPGMGLAKLCTLGFMFLGQLLHIILIAAQ 572
PC++ NG + + + + G FY+G P A G++ G L +L A Q
Sbjct: 215 PCQYANGDASNLVSAWNTWTGGVSAGSFYVGVPAAEAA--AGSGYVAPGDLTSAVLPAVQ 272
>01_05_0654 + 23965868-23967718
Length = 616
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +2
Query: 419 SRNCFITICIPGNVWIGSLLFGISWNGFSKTMYSGIHVPRTVITHYINSCTGCGTFXMG 595
++N F + G +W + L G + G++ + +G+ V+ + + +C G G G
Sbjct: 140 AKNAFAWAAVIG-MWSRAGLHGKALAGYAAMLEAGVPADNFVVPNVLKACAGLGLLGPG 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,914
Number of Sequences: 37544
Number of extensions: 355585
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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