Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E15
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)          28   7.6  
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = +3

Query: 324 VECIXADGIICNETKNGTFTXKLPCKWTNGYSLEIALLLSVFLGMFGLDRFYLGYPGMGL 503
           + CI  +G  C + KN       P    N     +  L + F+ +   +RFY     +  
Sbjct: 107 IACIALEGARCKQNKNPKIRLPFPVIANNAKPTRMESLSNNFIALSTSERFYHNKNLIFF 166

Query: 504 AKLCTLG 524
            K C +G
Sbjct: 167 NKSCCIG 173


>SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
 Frame = +3

Query: 225 ICPNPSIDQIDPDT--QQFXGCIKGKEIPSEGEAEVECIXADGIIC---NETKNGTFTXK 389
           +C NPS+  ID DT  Q   G +K          E++     G +C    + K G    K
Sbjct: 27  MCDNPSLADIDSDTDEQDENGHVKPHFDSRSKLFELDPCDGFGKVCLVYKDVKAGVTICK 86

Query: 390 LPCKWTNGYSLEIALLLSVFLGMFGLDRFYLGYP 491
            P  W    +LE + + + F   F +   +LG P
Sbjct: 87  -PEVWLLDRALEWSFISNTFSDYFRMMIMHLGLP 119


>SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 469 SNPNIPRNTDSNKAISREYPFVHLHGSFXVNVPFFVSLHIIPSAXIHSTSASPS 308
           S   I +N  ++ A+  E P  HLH    +N+  F+  +I  +  I  TS SP+
Sbjct: 109 SRIEIEKNKITHFALLIEEPEAHLHPQLQLNLFNFIKENIKENTQIFITSHSPT 162


>SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 543 LLHIILIAAQVVGPSXWVCLCHSI 614
           LL+ ++      G S WVCLCH +
Sbjct: 38  LLYSLIARITAGGTSVWVCLCHPV 61


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 579 GPSXWVCLCHSILWCW 626
           G S W CL  ++ WCW
Sbjct: 501 GASFWECLTRALPWCW 516


>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
          Length = 988

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 479 FGISWNGFSKTMYSGI-HVPRTVITHYINSCTGCGTF 586
           F  SWNG S  +Y G+   P TV+T       G G F
Sbjct: 615 FIASWNGVSFWLYPGMAATPTTVVTSDAAGAIGYGAF 651


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 60  KPYCSANVLLQMMKLVHSVHVYVCLVFLLSITEASDEAKVDKVH 191
           +PYC  +    M+K  H+ H  V +    S+    +EA ++ +H
Sbjct: 653 RPYCKLSFACSMLKQDHTKHQAVFVGCPSSVEVCEEEASLEMLH 696


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,625,768
Number of Sequences: 59808
Number of extensions: 432219
Number of successful extensions: 1177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)