Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E15
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26360.1 68414.m03216 hydrolase, alpha/beta fold family prote...    31   0.50 
At5g36950.1 68418.m04431 DegP protease, putative contains simila...    30   1.5  
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf...    28   6.2  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    27   8.2  

>At1g26360.1 68414.m03216 hydrolase, alpha/beta fold family protein
           similar to SP|Q40708 PIR7A protein {Oryza sativa},
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile PF00561: alpha/beta
           hydrolase fold
          Length = 444

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 622 HHNME*HKQTHXEGPTTCAAINIMCNNCPRNMN 524
           HH+ +  K +H     T AA N++ N  PRN N
Sbjct: 80  HHHQDHEKDSHIIQEQTLAATNLLFNQTPRNSN 112


>At5g36950.1 68418.m04431 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 586

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 452 GNVWIGSLLFGISWNGFSKTMYSGIHVPRTVITHYINSCTGCGTF 586
           G   +G+ + G+++   S     G  +P  VI H+IN    CG +
Sbjct: 267 GPAIMGNKVAGVAFQNLSGAENIGYIIPTPVIKHFINGVEECGKY 311


>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 419

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 547 NNCPRNMNPRVHSFAKPIPGYPK*KRSNPNI 455
           NN P +   + H    P PGYP  +  NPN+
Sbjct: 10  NNIPTSFGLKQHETPLPPPGYPP-RSENPNL 39


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 508 FAKPIPGYPK*KRSNPNIPRNTDSNKAI 425
           F KP   Y K KRS  ++ RN D+ +AI
Sbjct: 616 FLKPTSFYIKQKRSTVSVIRNNDNTRAI 643


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,022
Number of Sequences: 28952
Number of extensions: 304741
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)