Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E12
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 218 3e-58
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 218 3e-58
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 34 0.011
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 27 2.1
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 4.9
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.5
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 8.6
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 218 bits (533), Expect = 3e-58
Identities = 101/137 (73%), Positives = 117/137 (85%)
Frame = +2
Query: 59 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 238
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 239 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLERLKKIRAH 418
E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLRE LERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 419 RGMRHYWGLRVRGQHTK 469
RG+RH LRVRGQHTK
Sbjct: 121 RGLRHALDLRVRGQHTK 137
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 218 bits (533), Expect = 3e-58
Identities = 101/137 (73%), Positives = 117/137 (85%)
Frame = +2
Query: 59 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 238
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 239 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLERLKKIRAH 418
E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLRE LERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 419 RGMRHYWGLRVRGQHTK 469
RG+RH LRVRGQHTK
Sbjct: 121 RGLRHALDLRVRGQHTK 137
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 34.3 bits (75), Expect = 0.011
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 389 LERLKKIRAHRGMRHYWGLRVRGQHTK 469
+ RL IR +RGMRH GL V GQ+T+
Sbjct: 77 ISRLVNIRCYRGMRHVNGLPVNGQNTR 103
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 389 NXHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 288
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 118 DVRIHDTKNMLKFVWNDQRHFG*VSNQRSQTQQQGKRKS 2
D + + + +KF WN VSN +S+ + K+ S
Sbjct: 147 DKAVENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKKSS 185
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 122 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 214
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 288 YCXGFDMIVIIFSTSXSVHSPARLSRSMSAFLRTMLEYLR 169
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 6.5
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 191 LKKADIDLDKRAGECTEXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 370
L+K D L+ R+ ++ +E+ + ++ IP+ ++ +D + +L ++ D
Sbjct: 974 LRKLDGVLEARSKRLSQ--LEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVPASPD 1031
Query: 371 -SKLREXLERLKKIRAHRGMRHYWGLRVR 454
S ++ + LK R GM H W LR+R
Sbjct: 1032 KSAVQRGITALK--RDAEGMSHIWQLRLR 1058
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 355 LLQLGFKTP*XFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERXNCW 498
L L FK+ + D +R AT + S W A+ YWQ W
Sbjct: 43 LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,460
Number of Sequences: 5004
Number of extensions: 42284
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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