Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E12
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              246   1e-65
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 27   6.7  
SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)                 27   6.7  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  246 bits (601), Expect = 1e-65
 Identities = 109/137 (79%), Positives = 127/137 (92%)
 Frame = +2

Query: 59  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 238
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60

Query: 239 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLERLKKIRAH 418
           E EVE+++TIM NP QYKIPDWFLNRQKD  DGKYSQ+ ++ LD+K+RE LERLKKIRAH
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAH 120

Query: 419 RGMRHYWGLRVRGQHTK 469
           RG+RHYWGLRVRGQHTK
Sbjct: 121 RGLRHYWGLRVRGQHTK 137


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/34 (82%), Positives = 34/34 (100%)
 Frame = +2

Query: 59  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 160
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 249 TSXSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 139
           T  ++HS  + ++++  F+ + +E  RPT L  ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862


>SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)
          Length = 383

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 408 IFLSLSKXSRSFESKLEEVSWLYLPSTISF-CLFRNQ 301
           IFL  +   +  + KL+E S++YL ++  F C   NQ
Sbjct: 92  IFLYYAGRIKQVQGKLDETSYMYLKASFKFMCRITNQ 128


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 347 QLTSS--NLDSKLREXLERLKKI 409
           QLTS   N+D K+RE LE++KK+
Sbjct: 72  QLTSEEDNVDPKIREGLEKIKKL 94


>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1164

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 81   LSGMTSDILVKFLTNVPKHNSRGNGKA 1
            L G T D+L KF  ++PK + RG   A
Sbjct: 938  LCGNTRDVLHKFTVDLPKKHGRGGQSA 964


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 290  KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREXLERLKKIRAHRGMR 430
            K+  W L+     V+ KY +  S + + + LRE LE +KK+R   G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,361
Number of Sequences: 59808
Number of extensions: 315500
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)