Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E11
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.31 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.31 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       25   0.41 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.41 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.9  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   5.1  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   5.1  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    21   8.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 342 FKMHRHFLCLSLFIFAGYCDANYCRDANLCCPGRDS-SCVVQKAHXN 479
           F   +H+   +    AG+   +  R+    C  +D  SC++ K H N
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 342 FKMHRHFLCLSLFIFAGYCDANYCRDANLCCPGRDS-SCVVQKAHXN 479
           F   +H+   +    AG+   +  R+    C  +D  SC++ K H N
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +3

Query: 396 CDANYCRDANLCCPG-RDSSCVVQKAHXNAIIEDLTDKPCYCDHACLKLGDCCPDFRET 569
           C  N CR+   C     D  C  +        +  + K  +CDH   K G  C D  +T
Sbjct: 110 CSPNPCRNNGSCVDRIADFECNCKNGWKG---KTCSLKDSHCDHTTCKNGGTCQDLGKT 165


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 163 PAFHTKFIIYHSQFFGH 213
           PAFH ++  Y ++++GH
Sbjct: 438 PAFHNQYAHYPAEYYGH 454


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 610 HEPQLETTQSITPQVSRKSGQQSPNFK 530
           HEP L TT+ +  +   K  QQ   FK
Sbjct: 244 HEPLLITTEKLAAEGQTKLPQQPKLFK 270


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 441 SPGSTGSRPGNSSHRNSP 388
           SPG+   R GNS   N+P
Sbjct: 165 SPGAAAGRTGNSLSWNNP 182


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 213 VTEKLRMINYEFCMK 169
           +T+   MINY FC++
Sbjct: 271 LTDTAHMINYAFCVQ 285


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 213 VTEKLRMINYEFCMK 169
           +T+   MINY FC++
Sbjct: 271 LTDTAHMINYAFCVQ 285


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 6   VGSYLPGCAVAGGXCPDCAIPFPVLKLRVR 95
           V  ++ G   +GG  P  +  +P+ + RVR
Sbjct: 41  VSPHVIGGITSGGPIPTKSSKYPIKRKRVR 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,845
Number of Sequences: 336
Number of extensions: 2957
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)