Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E11
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 33 0.26
09_02_0343 + 7514514-7514948 29 3.2
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 29 3.2
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 28 5.6
09_06_0287 + 22047404-22048409,22048754-22049967 28 7.5
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 28 7.5
09_04_0331 - 16738148-16738231,16738232-16738318,16738486-167385... 27 9.9
08_02_1252 + 25595776-25596564 27 9.9
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 27 9.9
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438... 27 9.9
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = -1
Query: 603 PSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSP---- 436
PS ++ + + P S P S R S + R+ R +P RRR PSP
Sbjct: 243 PSAEKATKQQPRKPASPQRK-PAPSPRRRSPPSRRVESPRCRPDSPPIRRRTAPSPIRHG 301
Query: 435 GSTGSRPGNSSHRNSP 388
G+ RPG+ R SP
Sbjct: 302 GTPSRRPGSPIRRRSP 317
>09_02_0343 + 7514514-7514948
Length = 144
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -1
Query: 642 SQSRRWYRIPTTSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPS 463
+Q+ R R+ ++ R R S G RG +RGH + G WR G
Sbjct: 53 AQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRRGHCDAGGGDGATGWRSGEEG 112
Query: 462 E 460
E
Sbjct: 113 E 113
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = -1
Query: 609 TSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSPGS 430
+S S+K R K GS GN PI S + ++ + G + + P+P
Sbjct: 23 SSTSVKNRPTPT-KQEGSSGNAGPIRSPKAVASNQQKNGLTGVSRPLQQRPQSSSPNPRP 81
Query: 429 TGSRPGNSSHRNSPRK*TSLDK 364
GS NSS +S S+DK
Sbjct: 82 LGSGQPNSSKEHSSHNSNSVDK 103
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 468 PSERRRNYPSPGSTGSRPGNSSHRNSPRK*TSLDKE 361
PS R+RN GST +P N H + T +D++
Sbjct: 482 PSSRKRNLEEGGSTADKPLNRLHPADSIEGTVIDRD 517
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 59 CYSIPGFEITCQTSS 103
CY +PGF +TC SS
Sbjct: 49 CYHLPGFNLTCDRSS 63
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 483 IIEDLTDKPCYCDHACLKLGDCCPDFRETCGVID 584
+ + +KP + + +CLK CPD E G D
Sbjct: 800 LASNFAEKPAWRNSSCLKTALMCPDLYEQTGTGD 833
>09_04_0331 -
16738148-16738231,16738232-16738318,16738486-16738582,
16739139-16739176,16740140-16740196,16740487-16740964,
16741199-16741203
Length = 281
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 6 VGSYLPGCAVAGGXCPDCAIP--FPVLKLRVRRVRGYIVLVIFLA 134
V + + G AG CP CA+ + L +RR RG + L+ FLA
Sbjct: 201 VTARVEGVGGAGQQCPSCAVDKCKELSMLGIRRSRGGLNLMDFLA 245
>08_02_1252 + 25595776-25596564
Length = 262
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 639 QSRRWYR--IPTTSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAP 466
Q ++W R +PTT PSL Q +R+S S + S+ A P R P
Sbjct: 96 QRQQWRRQWVPTTLPSLSQIWSEVRQSVSSSSS----------SSTAASAAPPLVRPRLP 145
Query: 465 SERRRNYPSPGS 430
S RR +P P S
Sbjct: 146 SRRRCLHPLPPS 157
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 652 RTMLPEPQVVSHSDHEPQL-ETTQSITPQVSR 560
+ + P P +V+H H P E TQ+ TP ++
Sbjct: 141 QALTPAPSLVTHPPHSPSTPEKTQAATPSATQ 172
>03_01_0004 +
41829-42203,42376-42474,42699-42743,43604-43741,
43852-44157,44779-45689,45826-46093
Length = 713
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +3
Query: 519 DHACLKLGDCCPDFRETCGVIDCVVSSW 602
DH L CC + C DC SW
Sbjct: 83 DHRLLSAAACCESCKAMCKANDCRCDSW 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,763
Number of Sequences: 37544
Number of extensions: 330916
Number of successful extensions: 1103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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