Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E11
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.52 
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   6.4  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 0.52
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = -1

Query: 594 KQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRP 415
           K  + S+RK P SR N    S + G    +CR  P   R  + S R  ++P    T S+P
Sbjct: 241 KNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPA--RRRSRSTRPTSWPRSRPT-SKP 297

Query: 414 GNSSHRNSP 388
                R  P
Sbjct: 298 KRLPRRRRP 306


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +3

Query: 432 CPGRDSSCVVQKAHXNAIIEDLTDKPCYCDHACLKLGDCC--PDFRE-TCGVIDCVVSSW 602
           C  R   C+  + + N   E    + C C+      G  C  PD    TCG   C  S  
Sbjct: 535 CSDR-GECICGQCYCNPGFEG---EHCECNECATIDGSICGGPDHGICTCGTCSCFDSWS 590

Query: 603 GSWSECDT 626
           G   EC T
Sbjct: 591 GDNCECTT 598


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,955
Number of Sequences: 2352
Number of extensions: 12844
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)