Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E11
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.84 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   1.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 462 ERRRNYPSPGSTGSRPGNSSHR 397
           E RRN P PGS G R    SHR
Sbjct: 53  EPRRN-PGPGSKGPRDFPRSHR 73


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -1

Query: 468  PSERRRNYPSP--GSTGSRPGNSSHRNSPR 385
            P  +  N P P  G  G+RP    +RN  R
Sbjct: 1016 PQSQEANKPKPATGGKGTRPKRGKYRNYDR 1045


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 639 QSRRWYRIPTTSPSLKQRNRSLR---KSPGSRGNNLPISSKRGHSN 511
           +++R YR    +   + RNR+ R   K P    NN P+S+   ++N
Sbjct: 51  KNKREYRKYRETSKERSRNRTERERSKEPKIISNNNPLSNNYNYNN 96


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 450 NYPSPGSTGSRPGNSSHRNSPRK*TSLDKEN 358
           +YP  GS+   P + S   S    TSL  EN
Sbjct: 82  SYPGGGSSSPSPSSPSSFFSSVSPTSLGSEN 112


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 381 IFAGYCDANYCRDANLCCPGR 443
           +  G C   Y +  NLC  GR
Sbjct: 178 LILGSCKCIYVQSINLCMAGR 198


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 624 YRIPTTSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLG 493
           + +  T  S+ Q  RSL  S  S   + P+SS   HS+     G
Sbjct: 47  FGVENTISSVPQPPRSLEGSYDSSSGDSPVSS---HSSNGIHTG 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,428
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)