Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E04
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 140 2e-34
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 67 2e-12
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 4e-10
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 57 3e-09
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 53 4e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 52 7e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 51 1e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 48 9e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 3e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 6e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 46 6e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 1e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 43 4e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 6e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 8e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 1e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 3e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 3e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 0.001
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.005
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 36 0.005
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.007
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.027
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.035
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.035
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.062
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.081
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.14
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.25
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.33
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.43
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.0
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.8
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.0
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 4.0
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.3
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 5.3
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 5.3
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 140 bits (338), Expect = 2e-34
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 6/175 (3%)
Frame = +2
Query: 95 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 271
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 272 HFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 451
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 452 H-----GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGG+ + +++E RNFF++FG +L + DK + +GF F+T+
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Score = 60.5 bits (140), Expect = 2e-10
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 398 GEHTINNKKVDPKKA 442
TI+ K V+ K+A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 67.3 bits (157), Expect = 2e-12
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Frame = +2
Query: 197 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 371 ESIDKVMAA-GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLS 481
E+ +AA G I+ + V +P+ A+ R G +FVG LS
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 482 SEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++D++ F G I + +P D + KGF ++TF
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 55.2 bits (127), Expect = 8e-09
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
+FVG LS+ T+ +L FG G+I SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 401 EHTI 412
H I
Sbjct: 428 GHFI 431
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 59.7 bits (138), Expect = 4e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +2
Query: 119 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIX 298
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 299 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 409
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 56.8 bits (131), Expect = 3e-09
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 401 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 556
+T+ + DP K G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 557 DKTKNQXKGFCFITF 601
D+ N KG+ F+ F
Sbjct: 202 DELGN-AKGYGFVHF 215
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.8 bits (121), Expect = 4e-08
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Frame = +2
Query: 185 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 358
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 359 FKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 460
F P++ I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +2
Query: 401 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 559
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 560 KTKNQXKGFCFITF 601
KT + KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 52.0 bits (119), Expect = 7e-08
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 203 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+D R +FVG L++E ++ L +FG G I + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 383 KVMAAGE 403
K + E
Sbjct: 326 KALLLNE 332
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FVG L+ E ++ + +F + G+I V + D N KGF +I F
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 51.2 bits (117), Expect = 1e-07
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 389 MAAGEHTINNK--KVDPKK 439
+ ++ + KV PK+
Sbjct: 113 LLLNGSMLHERPLKVTPKR 131
Score = 33.9 bits (74), Expect = 0.020
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++VG + ++ +E+++ F+ G++ V + DK KGF +I F
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 48.4 bits (110), Expect = 9e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 203 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
RDD L V LS +T ++ELRD F +G I + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 434 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 146 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 316
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 317 DPNTGRSRGFAFIVFK 364
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 43.2 bits (97), Expect = 3e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
LFV L+++T +L + F G I V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 401 EHTINNKKV 427
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 33.9 bits (74), Expect = 0.020
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 374 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 547
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 548 MPFDKTKNQXKGFCFITF 601
+ D ++ G FI F
Sbjct: 308 LVKDPATDRSLGRGFIKF 325
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 46.8 bits (106), Expect = 3e-06
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 389 MA-AGEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIR 508
+A +G+ + + K KAR ++ V + ++D++++
Sbjct: 298 IALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVK 357
Query: 509 NFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
F FG I V + D +N+ KGF +I +
Sbjct: 358 AIFEPFGDIEFVHLQRD-DQNRSKGFGYIQY 387
Score = 34.3 bits (75), Expect = 0.015
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
+L V + + TD++++ F +G+I ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 128 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSIN 307
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 308 VKTDPNTGRSRGFAFIVFKAPE 373
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +2
Query: 380 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 550
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 551 PFDKTKNQXKGFCFITF 601
+ +GF F++F
Sbjct: 133 MREPVTKASRGFGFLSF 149
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 45.6 bits (103), Expect = 6e-06
Identities = 28/100 (28%), Positives = 47/100 (47%)
Frame = +2
Query: 152 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 332 RSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 451
RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++F+ L+ ++D++++ F FG + V MP DK N KGF +I F
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +2
Query: 176 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 355
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 356 VFKAPESI 379
F SI
Sbjct: 141 SFDKRSSI 148
Score = 31.5 bits (68), Expect = 0.11
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++FV +S ++ +++R F FG + +++ + G C I+F
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISF 142
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
D + +F+ LS++T + ++ F YG I I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +2
Query: 401 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXK 580
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 581 GFCFITF 601
+ FI F
Sbjct: 147 HYAFIEF 153
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK----APESIDKV 388
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.9 bits (94), Expect = 8e-05
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
I++G L ++++D+I FSEFG + + + DK + KGF F+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
+FVG + ++ +++++ + F G + + + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 401 EHTINNKKVDPKKAK 445
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FVG + ++S+ ++ F++ G + ++ D KG+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FV L+ D+++ FS FG I+ ++ DK + FI F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.9 bits (89), Expect = 3e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID-KVMAA 397
LFVG L ++ L D F A G++ GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 398 GEHTINNKKVDPKKAKARHGK 460
+ NK + A R GK
Sbjct: 161 NNQFLMNKPITVSYAFKREGK 181
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Frame = +2
Query: 203 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
R+ D +++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 383 KV-MAAGEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTIL 538
+ + K + +A G +FVG L + + + + FS G ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 539 XVEMPFDKTKNQXKGFCFITF 601
+ KG+ F+++
Sbjct: 127 KAPQVARDENGRSKGYGFVSY 147
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 431 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 553
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 33.9 bits (74), Expect = 0.020
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVF 361
+FVG LS + ++ F + Y S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.76
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 3e-04
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +2
Query: 167 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGR 334
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 335 SR----GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 439
+R G AF+ F E +DK + T+N K +D ++
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +2
Query: 371 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 550
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 551 PFDK----TKNQXKGFCFITF 601
PF + T+ G F+TF
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTF 96
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 562
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/50 (28%), Positives = 34/50 (68%)
Frame = +2
Query: 452 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
H ++FVG L ++++D+ + FSE+ +++ ++ D+ + + +GF F++F
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSF 77
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.9 bits (79), Expect = 0.005
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +2
Query: 167 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIXSINVKTDPNTGRS 337
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 338 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 439
+G+ F+ F+ E+ + T+N V K+
Sbjct: 425 KGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 410 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 535
+NN K+ P + + I+VG + S +SD+EI FS++G +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 33.1 bits (72), Expect = 0.035
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Frame = +2
Query: 176 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI----------NVKTD 319
+++ PG+ D+ ++VG + +D+E+ HF YG++ SI K
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAK 61
Query: 320 PNTGRSRG--FAFIVFKAPESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 463
P G + F+ F ESI++V+ A T+ +K+ K K+
Sbjct: 62 PFKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 374 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 547
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 548 MPFDKTKNQXKGFCFITF 601
M D+ GFCF+ +
Sbjct: 63 MGVDRFTKTPCGFCFVEY 80
Score = 33.9 bits (74), Expect = 0.020
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 397
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 398 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 517
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
++VG + +E ++++ D F G + S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.14
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.027
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEM 550
+I+VGGLSS I ++ + FS FG++ +E+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEI 36
Score = 33.1 bits (72), Expect = 0.035
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINV--KTDPNTGRSRGFAFIVFKAPE 373
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.1 bits (72), Expect = 0.035
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KI++ L + +D++ FG +L ++ + KGFCF F
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
D K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 386 VMAA--GEHTINNK 421
++ G+ T NK
Sbjct: 367 AISGLDGKDTYGNK 380
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 33.1 bits (72), Expect = 0.035
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 434 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.062
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
I V L+ ++ + I F +G I + MP K KG+C+I +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.081
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
++ K+ V L + T+ ++++ F + G +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 433
++L + F +G I S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 434 KKAKARHGK 460
A+ R +
Sbjct: 495 NYAEKREDR 503
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 413 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCF 592
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 593 ITF 601
F
Sbjct: 342 ACF 344
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 325
R +F+G L +KE+ + FG +G+I I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEM 550
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.5 bits (63), Expect = 0.43
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +2
Query: 191 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
E P LF+ G+ E D ++R HF YG + S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 371 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 505
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 425 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 535
+ P K +F+GG++ + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 338 RGFAFIVFKAPESIDKVMAAGEHTINNKK 424
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 325
R +F+G L T+ E+R+ +G I I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTI 535
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 182 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 325
N A A R +++G T + L++ F +GEI +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 228 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 115
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEI 295
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/72 (19%), Positives = 31/72 (43%)
Frame = +2
Query: 266 RDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 445
R++ GE+ V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 446 ARHGKIFVGGLS 481
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 445 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 284
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEM 550
++V L I+ E+R++F FG IL ++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 431 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGF 586
P++ + +GK L+S ++E+RN FSEF L E+ F+ ++ + F
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRSFVQEF 994
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 491 SDDEIRNFFSEFGTILXVEM 550
+++ IR+FFS+FG + VE+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL 274
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2
Query: 481 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 302
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 301 TL 296
TL
Sbjct: 1251 TL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,116
Number of Sequences: 5004
Number of extensions: 50446
Number of successful extensions: 224
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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