Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E04
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 106 1e-23
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 105 3e-23
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 104 4e-23
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 104 4e-23
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 104 4e-23
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 102 2e-22
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 102 2e-22
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 102 2e-22
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 102 2e-22
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 98 4e-21
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 98 4e-21
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 96 2e-20
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 2e-17
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 83 2e-16
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 71 9e-13
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 70 2e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 2e-12
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 68 6e-12
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 67 1e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 67 1e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 66 2e-11
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 4e-11
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 64 1e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 3e-10
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 62 4e-10
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 62 4e-10
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 61 5e-10
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 61 5e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 61 5e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 61 5e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 60 1e-09
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 60 1e-09
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 60 1e-09
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 60 1e-09
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 60 1e-09
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 59 2e-09
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 59 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 59 3e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 59 3e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 59 3e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 59 3e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 59 3e-09
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 58 4e-09
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 58 4e-09
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 58 4e-09
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 58 7e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 9e-09
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 57 9e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 57 9e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 57 9e-09
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 57 9e-09
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 57 9e-09
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 57 9e-09
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 57 9e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 56 2e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 2e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 56 2e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 56 2e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 56 2e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 56 3e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 4e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 55 5e-08
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 55 5e-08
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 55 5e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 55 5e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 6e-08
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 54 8e-08
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 8e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 1e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 1e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 1e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 53 2e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 52 2e-07
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 52 4e-07
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 51 6e-07
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 51 6e-07
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 51 8e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 8e-07
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 50 1e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 50 1e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 50 1e-06
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 50 1e-06
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 50 1e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 2e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 50 2e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 2e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 48 4e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 4e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 48 4e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 48 4e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 47 9e-06
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 47 9e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 9e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 47 9e-06
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 47 9e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 47 9e-06
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 47 1e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 2e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 2e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 3e-05
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 46 3e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 45 4e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 45 5e-05
At2g47310.1 68415.m05906 flowering time control protein-related ... 44 7e-05
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 44 7e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 7e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 44 7e-05
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 44 7e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 44 9e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 9e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 1e-04
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 43 2e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 43 2e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 4e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 41 8e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 40 0.001
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 40 0.001
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 40 0.001
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 40 0.002
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.002
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 39 0.003
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 39 0.003
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 38 0.004
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.006
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.006
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.006
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.006
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.008
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.008
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.008
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 38 0.008
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 37 0.010
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 37 0.013
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 37 0.013
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 37 0.013
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.017
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 36 0.023
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.030
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.030
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.040
At5g51300.2 68418.m06360 splicing factor-related contains simila... 35 0.040
At5g51300.1 68418.m06359 splicing factor-related contains simila... 35 0.040
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.040
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.040
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.040
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.040
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.053
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.070
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 34 0.093
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.093
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 33 0.12
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.16
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 33 0.16
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 33 0.21
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 32 0.28
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 32 0.37
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 32 0.37
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.37
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 31 0.50
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 31 0.50
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 0.50
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.50
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.50
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 31 0.65
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 31 0.65
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.65
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 31 0.87
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 31 0.87
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 31 0.87
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.87
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 30 1.1
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 30 1.1
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 30 1.1
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 30 1.1
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 1.5
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.5
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 30 1.5
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.0
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 2.6
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 2.6
At2g47390.1 68415.m05915 expressed protein 29 2.6
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 2.6
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 3.5
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.6
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 28 4.6
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 4.6
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 6.1
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 28 6.1
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 6.1
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 6.1
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 28 6.1
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 6.1
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 28 6.1
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 28 6.1
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 8.1
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 27 8.1
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 106 bits (254), Expect = 1e-23
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 25/156 (16%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 389 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 493
+ +H+I+ ++VD K+A +R KIFVGGL ++
Sbjct: 64 LQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 494 DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
D+E R +F +G + V + +D+ N+ +GF F++F
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +2
Query: 113 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 283
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 284 YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 463
YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 464 FVGGLS 481
GG S
Sbjct: 193 GGGGRS 198
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 105 bits (252), Expect = 3e-23
Identities = 63/177 (35%), Positives = 97/177 (54%), Gaps = 17/177 (9%)
Frame = +2
Query: 122 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 286
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 287 GEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK---------- 436
GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDT 148
Query: 437 --KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KA ++ KIFVGGL + +DE++N+F +G I+ ++ +D + +GF F+TF
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF 205
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 395 AGE-HTINNKKVDPKKAKAR 451
G+ H + +K+V+ K+A+ +
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 104 bits (250), Expect = 4e-23
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 25/153 (16%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 398 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 502
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 503 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+N+F +FGTI V + +D + +GF FITF
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 395 AGEHTINNKKVDPKKA 442
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +2
Query: 455 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
GK+F+GG+S + ++ +R++FS +G ++ + D+ + +GF FI F
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 104 bits (250), Expect = 4e-23
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 25/153 (16%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 398 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 502
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 503 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+N+F +FGTI V + +D + +GF FITF
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 395 AGEHTINNKKVDPKKA 442
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +2
Query: 455 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
GK+F+GG+S + ++ +R++FS +G ++ + D+ + +GF FI F
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 104 bits (250), Expect = 4e-23
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 25/153 (16%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 398 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 502
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 503 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+N+F +FGTI V + +D + +GF FITF
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 395 AGEHTINNKKVDPKKA 442
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +2
Query: 455 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
GK+F+GG+S + ++ +R++FS +G ++ + D+ + +GF FI F
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 102 bits (245), Expect = 2e-22
Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 28/156 (17%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 74
Query: 398 GEHTINNKKVDPKKAKAR-------------------HG---------KIFVGGLSSEIS 493
+H I+ + V+ KKA R HG KIFVGGL S I+
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 494 DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ E +N+F +FGTI V + +D + +GF FITF
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 170
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 395 AGEHTINNKKVDPKKA 442
H +N K V+ K+A
Sbjct: 182 KTFHELNGKMVEVKRA 197
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/49 (30%), Positives = 32/49 (65%)
Frame = +2
Query: 455 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
GK+F+GG+S + ++ ++ +F ++G ++ + D+T + +GF FI F
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 102 bits (245), Expect = 2e-22
Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Frame = +2
Query: 161 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 341 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 487
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 488 ISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++DE+++FF+++G ++ ++ D N+ +GF F+ F
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 395 AG------EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 529
G + + KK +PKK+ R + S+D ++ +G
Sbjct: 169 KGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 102 bits (245), Expect = 2e-22
Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Frame = +2
Query: 161 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 341 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 487
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 488 ISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++DE+++FF+++G ++ ++ D N+ +GF F+ F
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 395 AG 400
G
Sbjct: 169 KG 170
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 102 bits (244), Expect = 2e-22
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%)
Frame = +2
Query: 113 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 292
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 293 IXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 457
I + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 458 ----KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KIFVGG+ S + DDE + FF +FG + ++ D + + +GF F+T+
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
Score = 61.3 bits (142), Expect = 5e-10
Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGG+ D E ++ F +GE+ + D +TGRSRGF F+ +++ + +D ++A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 395 AGEH-TINNKKVDPKKAKAR 451
G ++ +V+ KKA+ +
Sbjct: 190 KGNRIELSGTQVEIKKAEPK 209
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 99.5 bits (237), Expect = 2e-21
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 21/149 (14%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 398 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 514
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 515 FSEFGTILXVEMPFDKTKNQXKGFCFITF 601
F++FG I V + +D + +GF FI++
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISY 154
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 194 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 374 SIDKVMAAGEHTINNKKVDPKKA 442
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 99.5 bits (237), Expect = 2e-21
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 21/149 (14%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 398 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 514
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 515 FSEFGTILXVEMPFDKTKNQXKGFCFITF 601
F++FG I V + +D + +GF FI++
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISY 154
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 194 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 374 SIDKVMAAGEHTINNKKVDPKKA 442
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 98.3 bits (234), Expect = 4e-21
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 23/156 (14%)
Frame = +2
Query: 203 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 383 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 493
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 494 DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ + + +F +FGT V + +D + +GF FIT+
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +2
Query: 146 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 325
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 326 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 442
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 98.3 bits (234), Expect = 4e-21
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 23/156 (14%)
Frame = +2
Query: 203 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 383 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 493
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 494 DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ + + +F +FGT V + +D + +GF FIT+
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +2
Query: 146 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 325
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 326 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 442
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 96.3 bits (229), Expect = 2e-20
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 25/156 (16%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 389 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 493
+ +H I+N+ VD K+A +R KIFVGGL ++
Sbjct: 64 L-QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 494 DDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
DE R +F +G + + D+T + +GF F++F
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF 158
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 395 AGEHTINNKKVDPKKA 442
H +N K+V+ K+A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 395 AGEHTINNKKVDPKKAKARHG 457
+ H +++K+V+ K+A + G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 57.2 bits (132), Expect(2) = 2e-17
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 206 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 383 KVMAAGEHTINNKKVDPKKAKARH 454
K + H I K VD +KA +H
Sbjct: 62 KAL-RDTHFILGKPVDVRKAIRKH 84
Score = 48.8 bits (111), Expect(2) = 2e-17
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +2
Query: 446 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+R KIFVGGLSS +++E +++F FG V + D N+ +GF F+T+
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY 168
Score = 44.8 bits (101), Expect = 5e-05
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGG++ E S++ ++ +FS +G +L + +K + +GF F+ F
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 82.6 bits (195), Expect = 2e-16
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
+RKL V G+ W+ L+D+ +G++ V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 392 AAGEHTINNKKVDPKKAKARH---------GKIFVGGLSSEISDDEIRNFFSEFGTILXV 544
GEH + N+ ++ K A + +IFV + S +S+ + R+ F +G I +
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 545 EMPFDKTKNQXKGFCFITF 601
MP D Q +G FITF
Sbjct: 121 YMPKDYNSKQHRGIGFITF 139
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/83 (33%), Positives = 39/83 (46%)
Frame = +2
Query: 179 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 358
+ E R K+FVG L E + +LRD+FG +G I + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 359 FKAPESIDKVMAAGEHTINNKKV 427
F D+V A H I ++V
Sbjct: 288 FAENGVADRV-ARRSHEICGQEV 309
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KIFVG L E S D++R++F FG I +P D ++ +GF F+TF
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
++FV + ++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 70.5 bits (165), Expect = 9e-13
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 398 GEHTINNKKVD 430
I+ ++ +
Sbjct: 85 PTPIIDGRRAN 95
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E + +R F ++G IL + DK + KG+ F+TF
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 194 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 374 SIDKVMAAGEHTINNKKVDPKKA 442
++DKV+ H +N K V+ K A
Sbjct: 86 AVDKVLQKTFHELNGKMVEVKLA 108
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +2
Query: 383 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 553
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I V +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
Query: 554 FDKTKNQXKGFCFITF 601
+D + +GF FI++
Sbjct: 66 YDHRTQRPRGFGFISY 81
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E + +R F ++G IL + DK + KG+ F+TF
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 67.7 bits (158), Expect = 6e-12
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK+FV GL W+T L D F YGEI D +G+S+G+ FI+FK+ +
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 395 AGEHTINNKKV------------DPKKAKARH-------GKIFVGGLSSEISDDEIRNFF 517
+ I + +P A A+H KI+V +S++I ++ FF
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 518 SEFGTILXVEMPFDKTKNQXKGFCFITF 601
S FG I + DK + KGF +
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVY 275
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK++V +S + ++L + F +GEI + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 395 AGEHTINNKKVDPKKA 442
T + KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 398 GEHTINNKKVD 430
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E DE+R +F +FG IL + DK + KG+ F+TF
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 398 GEHTINNKKVD 430
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E DE+R +F +FG IL + DK + KG+ F+TF
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 386 VMAA-GEHTINNKKVDPKKAKARHG 457
+AA ++ + + KA+ G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQG 88
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ F+GGL+ SD +R+ F ++G ++ ++ DK + +GF FITF
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF 55
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 128 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSIN 307
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 308 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 451
V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 45.6 bits (103), Expect(2) = 4e-11
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
D KLFVG L + +L F + G + + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 392 AAGEHTINNKKVDPKKAKARHG 457
AA + N ++D + + G
Sbjct: 147 AAAQQ-FNGYELDGRPLRVNAG 167
Score = 39.5 bits (88), Expect(2) = 4e-11
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++VG LS + D + + FSE G ++ + +D+ + KGF F+T+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
K+FVG L + ++ F G + VE+ +DK + +GF F+T
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVT 138
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 398 GEHTINNKKVD 430
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +2
Query: 452 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
H K+FVGGL+ E DE+R +F +FG IL + DK + KG+ F+TF
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 131 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 305 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGLS D ++ F+ FG + + D+ + +GF F++F
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 131 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 305 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGLS D ++ F+ FG + + D+ + +GF F++F
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KIFVGGL+ E D +R +F +FG I+ + DK + KG+ F+TF
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF 70
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 398 GEHTINNKKVDPKKAKAR 451
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KIFVGG+S + +R FS++G ++ ++ D+ + +GF F+TF
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 191 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 367
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 368 PESIDKVMAAGEHTINNKKV 427
+ + E + N+ V
Sbjct: 214 RKGARAALKNPEKRMYNRTV 233
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
IFV GL + + + ++ F +G I + DK + KGF F+ F
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +2
Query: 191 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 367
E+ RD R +FV G W+TT + L+ F +YGEI +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 368 PESIDKVMAAGEHTINNKKVDPKKAKARHGK 460
+ + + E + N+ V A + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
IFV G + + + ++ F +G I + DK + KG+ F+ F
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-D 382
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 383 KVMAAGEHTINNKKVDPKKAKAR 451
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ FVGGL+ D + F+++G ++ ++ D+ + +GF F+TF
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-D 382
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 383 KVMAAGEHTINNKKVDPKKAKAR 451
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ FVGGL+ D + F+++G ++ ++ D+ + +GF F+TF
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 398 GEHTINNKKVD 430
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E +RN+F +FG I+ + DK+ + KG+ F+TF
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 398 GEHTINNKKVD 430
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E +RN+F +FG I+ + DK+ + KG+ F+TF
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+F+GGLS D +R+ F+ FG ++ ++ D+ + +GF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+F+GGLS D +R+ F+ FG ++ ++ D+ + +GF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 395 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 499
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 500 EIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++ FFS+FG I + DK + KGFC +
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVY 293
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 395 AGEHTINNKKVDPKKA 442
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 452 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
H KIFV GL + + + F ++G I + FDK + KG+ FI +
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 395 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 499
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 500 EIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++ FFS+FG I + DK + KGFC +
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVY 293
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 395 AGEHTINNKKVDPKKA 442
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 452 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
H KIFV GL + + + F ++G I + FDK + KG+ FI +
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 395 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 499
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 500 EIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++ FFS+FG I + DK + KGFC +
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVY 293
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 395 AGEHTINNKKVDPKKA 442
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 452 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
H KIFV GL + + + F ++G I + FDK + KG+ FI +
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF----------K 364
RKLF+ GL+ +TT + LR F +YG++ V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 365 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 538
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 539 XVEMPFDKTKNQXKGFCFITF 601
+ FDK + +GF +
Sbjct: 195 EGPLGFDKVTGKSRGFALFVY 215
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK++V + ++ L +HF AYG++ + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 395 AGEHTINNKKVDPKKA 442
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF----------K 364
RKLF+ GL+ +TT + LR F +YG++ V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 365 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 538
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 539 XVEMPFDKTKNQXKGFCFITF 601
+ FDK + +GF +
Sbjct: 195 EGPLGFDKVTGKSRGFALFVY 215
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
RK++V + ++ L +HF AYG++ + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 395 AGEHTINNKKVDPKKA 442
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 59.3 bits (137), Expect = 2e-09
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Frame = +2
Query: 110 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 256
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 257 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVDP 433
+ L F G + V + T +SRGF F+ + E+ V + +N + +
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 434 KKAKARHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQ 574
KA R +++VG L ++ + + FSE G ++ + +D+ +
Sbjct: 224 NKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 575 XKGFCFIT 598
+GF F+T
Sbjct: 284 SRGFGFVT 291
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 398 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT-ILXVEMPFDKTK-N 571
K ++F+G + ++DE R + G + +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 572 QXKGFCFITF 601
+ +GF F+ +
Sbjct: 237 RNRGFAFVLY 246
Score = 32.3 bits (70), Expect = 0.28
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +2
Query: 119 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIX 298
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 299 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAK 445
I T P G R F F+ + S K + E + +N + ++ AK
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+F+GGLS + + +++ FS FG + V + +DK + +GF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-DKV 388
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 389 MAAGEHTINNKKVDPKKAKARHG 457
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+IFVGGLS ++++ ++ + F +G I ++ + + +GF FITF
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-DKV 388
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 389 MAAGEHTINNKKVDPKKAKARHG 457
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+IFVGGLS ++++ ++ + F +G I ++ + + +GF FITF
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 58.8 bits (136), Expect = 3e-09
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Frame = +2
Query: 131 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSIN 307
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 308 VKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-----------DPKKAKAR 451
V DP+ G+S+G+ F+ + E+ + +N+K+V DP K +
Sbjct: 164 VAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 452 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++V LS +SD+E+ F EFG + D + + KGF F+ F
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNF 271
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +2
Query: 191 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 371 ESIDKVM 391
E + +
Sbjct: 378 EEATRAI 384
Score = 39.9 bits (89), Expect = 0.001
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 397
++V LS +D+EL FG +G S + D G+S+GF F+ F+ + ++ V A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 398 GEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEISDDEIR 508
T ++K+ KA K++ ++V L ++DD++R
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 509 NFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
F+ FGTI ++ D + +G F+ F
Sbjct: 345 EHFAPFGTITSCKVMRDPS-GVSRGSGFVAF 374
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 398 GEHTINNKKVD 430
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E + ++ F +FG IL + DK + KG+ F+TF
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 398 GEHTINNKKVD 430
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E + ++ F +FG IL + DK + KG+ F+TF
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 398 GEHTINNKKVD 430
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ E + ++ F +FG IL + DK + KG+ F+TF
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +2
Query: 182 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 362 KAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 460
K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
++V GLS +++ ++ + F++ G + V + D + +GF FI+
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFIS 122
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 58.4 bits (135), Expect = 4e-09
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Frame = +2
Query: 167 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 347 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------KIFVGG 475
+I F S+ +A + V K ++A K++VG
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 476 LSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
L +S+ ++R F FG + V++P D Q KGF FI F
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 367
EA RD RK+FV GL WETT + L F YGEI V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 368 PESIDKVMAAGEHTINNK 421
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 367
EA RD RK+FV GL WETT + L F YGEI V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 368 PESIDKVMAAGEHTINNK 421
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 57.6 bits (133), Expect = 7e-09
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 401 EHT--------INNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 556
+T I DP + G IF+ L + I + + FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 557 DKTKNQXKGFCFITF 601
D T + KG+ F+ F
Sbjct: 170 DVT-GRSKGYGFVQF 183
Score = 52.8 bits (121), Expect = 2e-07
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES----IDKV 388
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 389 --MAAGE------HTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 538
M + H I ++ D R ++V L EI +DE+R F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 539 XVEMPFDKTKNQXKGFCFITF 601
+ D++ N + F F+ F
Sbjct: 257 SAVVMRDQSGNS-RCFGFVNF 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 386 VMAAGEHTINNKKVDPKKA 442
HTI+ + V+ K A
Sbjct: 66 ACENPNHTIDGRTVNCKLA 84
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 449 RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF 57
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 398 GEHTINNKKVD 430
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 398 GEHTINNKKVD 430
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 398 GEHTINNKKVD 430
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 57.2 bits (132), Expect = 9e-09
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Frame = +2
Query: 146 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 316
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 317 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 463
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 464 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
FVG L+ + ++ E+ F +FG + V + D+ + Q +G F+ +
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKY 258
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 57.2 bits (132), Expect = 9e-09
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Frame = +2
Query: 146 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 316
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 317 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 463
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 464 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
FVG L+ + ++ E+ F +FG + V + D+ + Q +G F+ +
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKY 258
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/131 (19%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 394
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 395 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT-ILXVEMPFD-KTK 568
K++ +A+H ++F+G + + +I+ + G + VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH-RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNM 211
Query: 569 NQXKGFCFITF 601
+ +GF FI +
Sbjct: 212 GRNRGFAFIEY 222
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 452 HG-KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
HG ++++GG+ ++ ++ +++ F G + V + +K KG+ F+TF
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTF 140
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 57.2 bits (132), Expect = 9e-09
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Frame = +2
Query: 185 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 358
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 359 FK-------APESIDKVMAAGEHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 508
F+ A ++++ + A + K K D K + ++ +++ L +++S+D +R
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 509 NFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
F+EFG I+ + + D+ + +G+ F+ F
Sbjct: 219 EKFAEFGKIVSLAIAKDENR-LCRGYAFVNF 248
Score = 45.6 bits (103), Expect = 3e-05
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 24/151 (15%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI------- 379
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F PE
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 380 ------DKVMAAG--------EHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 508
K + G E + + K + +K A+ I+V ++ ++++E+R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 509 NFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
FS+ GTI ++ D+ K + KGF F+ F
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCF 351
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 388
++V ++ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 401 EHTINNKKV--------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 556
+++ N K+ P + G +FV L +++ +++ F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 557 DKTKNQXKGFCFITF 601
+ +G+ F+ F
Sbjct: 145 TLEDGKSRGYGFVQF 159
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +2
Query: 140 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 313
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 314 TDPNTGRSRGFAFIVFKAPESIDKVM 391
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 41.5 bits (93), Expect = 5e-04
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 20/155 (12%)
Frame = +2
Query: 197 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIXSINVKTDPNTGR--SRGFAFIVF 361
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 362 KAPESIDKVMAAGEHTI-----------NNKKVDPKKAKARHG----KIFVGGLSSEISD 496
+ E+ V + T+ NK+ D + K+ V ++ E +
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 497 DEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
E+R FS FG I + +P K Q G+ F+ F
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEF 716
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 56.4 bits (130), Expect = 2e-08
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = +2
Query: 185 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 365 APESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLSSEISDDEIRNFFS 520
PE + M + + I ++ + DP + G +F+ L + I + + FS
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 521 EFGTILXVEMPFDKTKNQXKGFCFITF 601
FGTIL ++ D + KG+ F+ F
Sbjct: 154 SFGTILSCKVAMD-VVGRSKGYGFVQF 179
Score = 52.4 bits (120), Expect = 2e-07
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Frame = +2
Query: 173 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 352
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 353 IVFKAPE----SIDKV--MAAGEHTI----NNKKVDPKK--------------AKARHGK 460
+ F +PE +++K+ ++ GE + KK D ++ K +
Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN 329
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++ L ++D++++ FSE+G + ++ + ++ +GF F+ +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAY 375
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
L++ L D++L++ F YG + S V + + G SRGF F+ + PE
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 43.2 bits (97), Expect = 2e-04
Identities = 14/48 (29%), Positives = 31/48 (64%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+F+GG++ + +D +R F+++G ++ + D+ + +GF F+TF
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 398 GEHTINNKKVDPKKA 442
TI + + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF 61
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 398 ------GEHTINNKKVDPK 436
G+ I+ + +PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +2
Query: 446 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
A+ G +IFVGGLS E++D ++ FS FG IL ++ ++ + +GF FITF
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF 55
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 398 GEHTINNKKVD 430
IN ++ +
Sbjct: 78 STPIINGRRAN 88
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+FVGGL+ + + + + F ++G IL + DK + KG+ F+TF
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF 65
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 56.0 bits (129), Expect = 2e-08
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Frame = +2
Query: 143 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 322
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 323 NTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKARHGKIFVGGL 478
T S G+ ++ + + +K M ++ N K+ D ++ G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 479 SSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ + + FS GTI+ ++ D Q +G+ F+ F
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQF 181
Score = 50.4 bits (115), Expect = 1e-06
Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 401 EHTINNKKVDPKK---AKARH-------------------GKIFVG------GLSSEISD 496
+N KK D K+ KA+ G F G L ++D
Sbjct: 285 ---LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTD 341
Query: 497 DEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++R F+EFGTI ++ D + KG F+ F
Sbjct: 342 EKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAF 375
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 176 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 355
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 356 VFKAPESIDKVM 391
F A +V+
Sbjct: 374 AFSAASEASRVL 385
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 379
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ FVGGL+ + I F+EFG + ++ D+ + KGF F+TF
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTF 92
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/48 (29%), Positives = 31/48 (64%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++FV GLS +++++++ F+ FG ++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ FVGGL+ +D++++ FS+FG ++ ++ D+ + +GF F+TF
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 54.8 bits (126), Expect = 5e-08
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
++ KLFVG + ++ +L F + + +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 386 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILX 541
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 542 VEMPFDKTKNQXKGFCFITF 601
+++ + KG F+ +
Sbjct: 135 LQI-LRGAQQTSKGCAFLKY 153
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 54.8 bits (126), Expect = 5e-08
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
++ KLFVG + ++ +L F + + +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 386 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILX 541
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 542 VEMPFDKTKNQXKGFCFITF 601
+++ + KG F+ +
Sbjct: 135 LQI-LRGAQQTSKGCAFLKY 153
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 394
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 395 AGEHTINNKKV 427
G H + KK+
Sbjct: 411 NGRH-LGGKKL 420
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
D K++ G L W T + L+D FG + V + NTGRSRGF FI F++ E++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 386 VMA 394
+A
Sbjct: 276 ALA 278
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/76 (28%), Positives = 42/76 (55%)
Frame = +2
Query: 371 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 550
E +++ GE + +K +A G+++VG L I+ E+ F E GT++ V++
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
Query: 551 PFDKTKNQXKGFCFIT 598
+DK ++ +GF F+T
Sbjct: 148 VYDKVTDRSRGFGFVT 163
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +2
Query: 98 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 274
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 275 FGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 454
FG G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 455 GKIFVGGLSSEISDDEIRN 511
++ GG +E+ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.4 bits (125), Expect = 6e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ S + +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 398 GEHTINNKKVDPKKAKA 448
+ I+ + + A A
Sbjct: 73 SKPIIDGRTTNCNLASA 89
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KIFVG L+ + D++R +F +FG ++ + + + KG+ FITF
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 54.0 bits (124), Expect = 8e-08
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 15/184 (8%)
Frame = +2
Query: 89 MANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 265
++ N+A++ D + G + + + P ++ KLFVG L ++ + L
Sbjct: 70 VSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 129
Query: 266 RDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKA 442
F G + V + +T +SRGF F+ E +K V +N +++ +A
Sbjct: 130 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 443 KARHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKG 583
R +I+VG L ++ + FSE G ++ + D+ + +G
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 584 FCFI 595
F F+
Sbjct: 250 FGFV 253
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
K+FVG L ++ + F + GT+ E+ +++ +Q +GF F+T
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVT 160
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +2
Query: 182 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 362 KAPESIDKVMAAGEHTINNKKV 427
K+ ++ + + +H++ +V
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRV 115
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
++V GLS +++ ++ + F++ G + V + D + +GF FI+
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFIS 92
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +2
Query: 143 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 305 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 451
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +2
Query: 107 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 286
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 287 GEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
G + + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
K+FVG LS + ++ F G + VE+ +DK + +GF F+T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
+++VG LS + D + N F+E G ++ + +D+ + KGF F+T
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVT 296
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +2
Query: 143 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 305 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 451
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +2
Query: 107 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 286
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 287 GEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
G + + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
K+FVG LS + ++ F G + VE+ +DK + +GF F+T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
+++VG LS + D + N F+E G ++ + +D+ + KGF F+T
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVT 304
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 386 VMA 394
++
Sbjct: 269 ALS 271
Score = 48.0 bits (109), Expect = 5e-06
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 25/139 (17%)
Frame = +2
Query: 260 ELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH---- 406
+L D F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 407 --------TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILXV 544
T N +V PKK +++H K++VG L D +RN FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 545 EMPFDKTKNQXKGFCFITF 601
+ D+ + + F F++F
Sbjct: 242 RVLHDRKTGRNRVFAFLSF 260
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +2
Query: 167 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 347 AFIVFKAPES 376
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +2
Query: 371 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 550
ES++K + + D + + K+F+ GLS S+ +R F FG ++ V++
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 313
Query: 551 PFDKTKNQXKGFCFITF 601
DK + KG+ F+ +
Sbjct: 314 IMDKISKRSKGYAFLEY 330
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 52.8 bits (121), Expect = 2e-07
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Frame = +2
Query: 188 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 365 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG-------KIFVGGLSSEISDDEIR 508
E DKV+ ++ +NKK P + K G K+FVG L +S+ E++
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQ 117
Query: 509 NFFSEFGTILXVEM 550
+ FSE+GTI +++
Sbjct: 118 SLFSEYGTIKDLQI 131
Score = 35.5 bits (78), Expect = 0.030
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 401 EHTINNKKVDPKKAKAR 451
+T+N ++ KK K +
Sbjct: 389 -NTMNGCQLSGKKLKVQ 404
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
K+FVG + +++ ++ F EF + V + +KT +G CF+T
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLT 59
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 52.4 bits (120), Expect = 2e-07
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Frame = +2
Query: 173 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 352
+D EA D R +F ++ T++++ + F G++ + + D + RSRG +
Sbjct: 168 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 227
Query: 353 IVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------------KI 463
+ F S+ +A + + V K ++A ++
Sbjct: 228 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 287
Query: 464 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+VG L +S+D++R F FG++ V++P D+T KGF F+ F
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQF 332
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +2
Query: 134 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 305 NVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 427
+ TD G+ +GFA++ F E++ + E ++ +++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 434 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+K + I+VG + + +E++ F GT+ V + DK Q KGF ++ F
Sbjct: 96 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEF 150
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 51.2 bits (117), Expect = 6e-07
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 401 EHT-INNKKVD----------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 547
H+ + K + ++ + ++V L S I+ + F FG+IL +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 548 MPFDKTKNQXKGFCFITF 601
+ + Q KGF F+ F
Sbjct: 143 VV--EENGQSKGFGFVQF 158
Score = 46.4 bits (105), Expect = 2e-05
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Frame = +2
Query: 170 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 349
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 350 FIVFKAPESIDKVMAA--GEHTINNK-------KVDPK--------------KAKARHGK 460
F+ F PE+ K M + G + K K D + K R
Sbjct: 246 FVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSN 305
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++V LS +++ +R F +G I+ ++ + + KGF F+ F
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCF 351
Score = 41.1 bits (92), Expect = 6e-04
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 397
L+V L T L F +G I S V + G+S+GF F+ F +S +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 398 ------GEHTINNKKVDPKKAKARHGK-----IFVGGLSSEISDDEIRNFFSEFGTILXV 544
G+ K ++ + A G ++V L ++DD + FS++GT+ V
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 545 EMPFDKTKNQXKGFCFITF 601
+ D + +GF F+ F
Sbjct: 232 VVMRD-GMGRSRGFGFVNF 249
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Frame = +2
Query: 167 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 347 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 526
AF+ F E + + + + N K A + +FVG + + + +R +
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHY 317
Query: 527 G--TILXVEMPFDKTK-NQXKGFCFITF 601
G + + + D N +G+ F+ F
Sbjct: 318 GVENMDDITLVEDSNNVNMNRGYAFLEF 345
Score = 36.7 bits (81), Expect = 0.013
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYG--EIXSINVKTDPNT-GRSRGFAFIVFKA-PES 376
D+ LFVG + T + LR+ YG + I + D N +RG+AF+ F + ++
Sbjct: 292 DNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDA 351
Query: 377 ID--------KVMAAGEHTINNKKVD-----PKKAKARHGKIFVGGLSSEISDDEIRNFF 517
+D VM E D + A+ IF+ GL +++ +R+
Sbjct: 352 MDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLL 411
Query: 518 SEFGTILXVEMPFDKTKNQXKGFCFITF 601
+G + VE+ + + K F F+TF
Sbjct: 412 KPYGKLEKVELARNMPSARRKDFGFVTF 439
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+ +F+ GL ++ +RD YG++ + + + + R + F F+ F E+ V
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSC 448
Query: 395 AGEHTINNKKVDPKKAKAR 451
A INN ++ + KA+
Sbjct: 449 A--KFINNSELGEGEDKAK 465
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 50.8 bits (116), Expect = 8e-07
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 21/149 (14%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 391
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 392 ---AAGEH--TINN--KKVDPKKAKAR------------HGKIFVGGLSSEISDDEIRNF 514
A G+ TI K P + + + ++++G L+ + ++ +IR
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 515 FSEFGTILXVEMPFDKTKNQXKGFCFITF 601
FS+ I V + +K + KG+ + F
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGYAHVDF 309
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 386 VMAAGEHTINNKKV 427
+ + I + V
Sbjct: 318 ALKLDQQVICGRPV 331
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +2
Query: 182 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 362 KAPESIDKVMAA 397
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+IFVGGL ++ +IR FG + + D+ KG+ F +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDD-GSFKGYGHIEFASPEEAQKALE 442
Query: 395 AGEHTI---------NNKKVDPKKAK-ARHGK------IFVGGLSSEISDDEI----RNF 514
+ N++ P+ + R G+ I+V G SS + +DEI R+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 515 FSEFGTILXVEMPFDKTKNQXKGFCFI 595
FS+ G + V +P D+ +GF +I
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 155 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIXSINVKTDP 322
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 323 NTGRSRGFAFI 355
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 34.7 bits (76), Expect = 0.053
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 362 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILX 541
K ++ V A + K + + +F G LS +I+ +I NFF E G ++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 542 VEM-PFDKTKNQXKGFCFITF 601
V + FD KG+ I F
Sbjct: 413 VRLSSFD--DGSFKGYGHIEF 431
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 386 VM 391
+
Sbjct: 234 AL 235
Score = 44.8 bits (101), Expect = 5e-05
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE-------S 376
KL+ G L + L + + V + +TG+SRGFAF+ E +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 377 IDKVMAAGEHTINNKKVDPKKAK-----ARHGKIFVGGLSSEISDDEIRNFFSEFGTILX 541
+D G N PK K K+FVG LS ++ + + F E G ++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 542 VEMPFDKTKNQXKGFCFITF 601
+ FD + +G+ F+ +
Sbjct: 206 ARVVFDGDTGRSRGYGFVCY 225
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 50.0 bits (114), Expect = 1e-06
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Frame = +2
Query: 161 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
G + +SAE R+ D ++VGGL + +++ L + F G + ++ V D T +
Sbjct: 10 GANLLGQHSAE---RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 341 GFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDD 499
+ FI +++ E D KV+ G+ NK KK+ +F+G L ++ +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
Query: 500 EIRNFFSEFGTIL-XVEMPFDKTKNQXKGFCFITF 601
+ + FS FG I ++ D +GF FI++
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Score = 47.2 bits (107), Expect = 9e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +2
Query: 185 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI-NVKTDPNTGRSRGFAFIVF 361
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 362 KAPESIDKVMAA--GEHTINNK 421
+ E+ D + + G++ N +
Sbjct: 162 DSFEASDAAIESMTGQYLSNRQ 183
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 398 GEHTINNKKVD 430
+ NK++D
Sbjct: 97 ----MQNKELD 103
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KIFVGGLS + ++ F FG I+ + D+ +GF F+T+
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTY 84
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 50.0 bits (114), Expect = 1e-06
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 28/148 (18%)
Frame = +2
Query: 203 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
RDD D +FVG L+ + TD L + F A Y + V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 374 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 478
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 479 SSEISDDEIRNFFSEFGTILXVEMPFDK 562
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 40.7 bits (91), Expect = 8e-04
Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Frame = +2
Query: 185 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 365 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 502
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 503 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ F + + ++ ++ D+ + KG+ F+ F
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 158 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 50.0 bits (114), Expect = 1e-06
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 28/148 (18%)
Frame = +2
Query: 203 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
RDD D +FVG L+ + TD L + F A Y + V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 374 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 478
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 479 SSEISDDEIRNFFSEFGTILXVEMPFDK 562
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 40.7 bits (91), Expect = 8e-04
Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Frame = +2
Query: 185 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 365 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 502
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 503 IRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ F + + ++ ++ D+ + KG+ F+ F
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 158 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+++GGLS + +++ FS F + + +K + +G+ F+ F
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 394
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 395 AGEHTINNKKVDPKKAKAR 451
+N + + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
K+F+GGLS ++ + FS+ G ++ ++ D+ ++ KGF F+TF
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTF 82
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/87 (26%), Positives = 43/87 (49%)
Frame = +2
Query: 341 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 520
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 521 EFGTILXVEMPFDKTKNQXKGFCFITF 601
+FG ++ + M DK N+ KGF F+ +
Sbjct: 99 QFGNLIHMNMVMDKVANRPKGFAFLRY 125
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-Q 136
Query: 398 GEH--TINNKKVDPKKAKAR 451
G H ++ + + ++AK R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 164 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 332 RSRGFAFIVFK 364
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Frame = +2
Query: 197 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSIN-VKTDPNTGRSRGFAFIVFKA 367
PG D R ++ G + + T+ L++ F + G I S ++ D + S GF +
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRR 111
Query: 368 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 526
S+ + G H KV+ ++ + H IFVG LS E++D + + FS F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Query: 527 GTILXVEMPFDKTKNQXKGFCFITF 601
+ + +D+ + +GF F++F
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFVSF 196
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/47 (29%), Positives = 30/47 (63%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++VGG+ ++++ ++ FS++G I+ V + DK + KGF F+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAY 84
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 48.4 bits (110), Expect = 4e-06
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 24/151 (15%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 397
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+ A ++ V +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 398 GEHTINNK---------------------KVDPKKA--KARHGKIFVGGLSSEISDDEIR 508
H ++K + + K+A K + ++V L ISD++++
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 509 NFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
FS FGT+ ++ D KG F+ F
Sbjct: 150 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAF 179
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 176 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 355
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 356 VFKAPESIDKVMA 394
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +2
Query: 380 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 559
DK + G + ++ D K + ++V L+ +DD+++N F E+G I + D
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 63
Query: 560 KTKNQXKGFCFITF 601
+ + KGF F+ F
Sbjct: 64 -GEGKSKGFGFVNF 76
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 397
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + + + ++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 398 GE-HTINNKKVDPK 436
+ +N ++V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++VG LS +DD +R FS +G ++ + D+ ++ +GF F+T+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTY 51
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 48.4 bits (110), Expect = 4e-06
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Frame = +2
Query: 173 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 352
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 353 IVFKAPESIDKVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEI 490
+ F + + ++V+ ++ P +K +G +FVG LS ++
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 491 SDDEIRNFFSE-FGTILXVEMPFDKTKNQXKGFCFITF 601
+D + FS+ + ++ ++ D + KG+ F+ F
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 374 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 547
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++ V+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 548 MPFDK 562
+P K
Sbjct: 352 IPVGK 356
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 155 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 48.4 bits (110), Expect = 4e-06
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Frame = +2
Query: 197 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 377 IDKVMAAGEHTINNKKV-----------------DPKKAKARHG-------KIFVGGLSS 484
K + + +++ P+ R G KIFV G +
Sbjct: 351 AQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA 410
Query: 485 EISDDEIRN----FFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+S+D+I+N FS G I V +P D+ KG ++ F
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +2
Query: 371 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEIRNFFSEFGTILXVE 547
+S D M E + + P A K +F LS I ++ NFF E G ++ V
Sbjct: 268 KSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVR 327
Query: 548 MPFDKTKNQXKGFCFITF 601
++ +GF + F
Sbjct: 328 FSTNRDDGSFRGFGHVEF 345
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 389 MA 394
MA
Sbjct: 175 MA 176
Score = 38.3 bits (85), Expect = 0.004
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 386 V--------MAAGEHTI--------NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 517
M E T + +KVD A H IFVG L+ +++D ++ F
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD---AGPDH-SIFVGDLAPDVTDYLLQETF 136
Query: 518 S-EFGTILXVEMPFDKTKNQXKGFCFITF 601
+ ++ ++ D + + KG+ F+ F
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +2
Query: 197 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 377 IDKVMA 394
K +A
Sbjct: 110 SAKGIA 115
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FV GLS + + +R F++FG + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 47.2 bits (107), Expect = 9e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +2
Query: 134 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXS 301
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 302 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 439
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 377 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 556
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 557 DKTKNQXKGFCFITF 601
DK Q KGF ++ F
Sbjct: 123 DKF-GQPKGFAYVEF 136
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 47.2 bits (107), Expect = 9e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +2
Query: 134 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXS 301
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 302 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 439
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 377 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 556
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 557 DKTKNQXKGFCFITF 601
DK Q KGF ++ F
Sbjct: 123 DKF-GQPKGFAYVEF 136
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 164 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 343
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 344 FAFIVFKAPESIDK 385
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
++V GLS+ ++D ++ F++ G + + + +GF F+T
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVT 119
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 47.2 bits (107), Expect = 9e-06
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Frame = +2
Query: 167 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
++++ +A P + R++++G + T+++L +G + + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 347 AFIVFKAPESIDKVM-AAGEHTINNKKV-------------DPKKAKARHG-------KI 463
F K+ E + V+ +T+ +++ D ++ K+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKV 179
Query: 464 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+VG L+ ++ + + N FSE G ++ ++ ++ GF F+TF
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 225
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID- 382
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 383 KVMAAGEHTINNKKVDPKKA 442
++A + +K+ KA
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 47.2 bits (107), Expect = 9e-06
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHF--GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+++ ++VG L + L F G EI S+ V + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 383 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 520
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 521 E-FGTILXVEMPFDKTKNQXKGFCFITF 601
E + ++ ++ D + KG+ F+ F
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D +FVG LS + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 389 M 391
M
Sbjct: 256 M 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 47.2 bits (107), Expect = 9e-06
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHF--GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+++ ++VG L + L F G EI S+ V + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 383 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 520
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 521 E-FGTILXVEMPFDKTKNQXKGFCFITF 601
E + ++ ++ D + KG+ F+ F
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Score = 42.3 bits (95), Expect = 3e-04
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D +FVG LS + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 389 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 490
M + + ++ P + +G GG L S +
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 491 SDDEIRNFFSEFGTILXVEMPFDK 562
+D++++ F+EFG I+ V++P K
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVGK 339
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 125 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIXS 301
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 302 INVKTDPNTGRSRGFAFIVFK--APESIDKV 388
+ + G+ GF V + A E+++K+
Sbjct: 333 VKIP----VGKGCGFVQFVNRPNAEEALEKL 359
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 389 MAAGEHTINNKKV 427
+ E ++ +++
Sbjct: 149 LQLNESELHGRQL 161
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 377 IDKVMAAGEH-TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 553
++K M A + +I + ++ AR +FVG + + +E++ F GT+ V +
Sbjct: 67 VEKEMGAQDPASIAANQAGKEEVDAR--SVFVGNVDYACTPEEVQQHFQTCGTVHRVTIL 124
Query: 554 FDKTKNQXKGFCFITF 601
DK Q KGF ++ F
Sbjct: 125 TDKF-GQPKGFAYVEF 139
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 46.8 bits (106), Expect = 1e-05
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Frame = +2
Query: 176 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAF 352
+ AE P + +FVG L+ + TD L + F A Y + V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 353 IVFKAPESIDKVMAA--GEHTIN---------NKK---VDPKKAKARHGK---------- 460
+ F + M G++ + NKK + P + G
Sbjct: 220 VRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT 279
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 562
IFVG + +++D++++ F +FG ++ V++P K
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +2
Query: 197 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF----- 361
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 362 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 463
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +2
Query: 197 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF----- 361
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 362 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 463
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FV G+S +++ + FS++G +L V++ DK + + KGF ++TF
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTF 69
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 46.0 bits (104), Expect = 2e-05
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%)
Frame = +2
Query: 164 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 341 GFAFIVFKAPESIDKV--------MAAGEHTINNKKVDPKKAKARHGK------IFVGGL 478
G+ FI F + ++V M + E T + R IFVG L
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 479 SSEISDDEIRNFFSE-FGTILXVEMPFDKTKNQXKGFCFITF 601
+ E++D + + F +G++ ++ D+T + KG+ F+ F
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMP 553
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 173 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 349
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 350 FIVFKA 367
KA
Sbjct: 301 QYANKA 306
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
++V GLS+ ++D ++ F++ G + + + +GF F+T
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVT 118
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Frame = +2
Query: 113 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 274
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 275 FGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 454
FG G + SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 455 GK 460
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Frame = +2
Query: 113 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 274
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 275 FGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 454
FG G + SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 455 GK 460
GK
Sbjct: 731 GK 732
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 182 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 349
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 350 FIVFK 364
F+ F+
Sbjct: 189 FVSFR 193
Score = 44.4 bits (100), Expect = 7e-05
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Frame = +2
Query: 197 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSIN-VKTDPNTGRSRGFAFIVFKA 367
PG D R ++VG + + T+ L++ F + G + S ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 368 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 526
++ + G H KV+ ++ + H IFVG LS E++D + FS F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Query: 527 GTILXVEMPFDKTKNQXKGFCFITF 601
+ + +D+ + +GF F++F
Sbjct: 168 SSCSDARVMWDQKTGRSRGFGFVSF 192
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 45.6 bits (103), Expect = 3e-05
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 22/143 (15%)
Frame = +2
Query: 188 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 365 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG----------------KIFVGGLS 481
E DKV+ ++ +NKK P + K G K+FVG L
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLP 117
Query: 482 SEISDDEIRNFFSEFGTILXVEM 550
+S+ E+++ FSE+GTI +++
Sbjct: 118 KNVSETEVQSLFSEYGTIKDLQI 140
Score = 35.5 bits (78), Expect = 0.030
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 401 EHTINNKKVDPKKAKAR 451
+T+N ++ KK K +
Sbjct: 398 -NTMNGCQLSGKKLKVQ 413
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
K+FVG + +++ ++ F EF + V + +KT +G CF+T
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLT 59
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
+ KLFVG L ++ E++ F YG I + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 392 AA--GEHTINNKKV 427
A G H + V
Sbjct: 167 EALNGRHIMEGANV 180
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 224 FVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 391
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 36.3 bits (80), Expect = 0.017
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +2
Query: 464 FVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
FV GL + + ++ + FS+FG ++ ++ +D+ + + F F+TF
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTF 55
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
+LFV LS TTD+ LR F +G+I + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +2
Query: 440 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
AK ++FV LS+ +D +R FS FG I + D + KGF FITF
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITF 55
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 44.4 bits (100), Expect = 7e-05
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Frame = +2
Query: 158 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 332 RSRGFAFIVFKAPESIDKVMAA--GEHTINNKKVDPK-----KAKARHG----------K 460
+ FI +K E + +AA + T + + K + R G K
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPK 208
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF*I*XSCK 622
++V L+ + + E+ FS +G I + M D K +G+ F+ F SCK
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQF----SCK 257
Score = 34.7 bits (76), Expect = 0.053
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 209 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
D+ KL+V L+ +TT E+ + F YG I I + D + RG+AF+ F E
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 44.4 bits (100), Expect = 7e-05
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +2
Query: 164 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 343
G + + + E+P R L+VGGL+ ++++RD F A+GEI SI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 344 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 460
AF+ + E +K A E N V+ ++ K G+
Sbjct: 265 CAFVTYTTREGAEK---AAEELSNRLVVNGQRLKLTWGR 300
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 376
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FVG + + +++++R E G ++ + D+ + KG+ F +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEY 57
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.4 bits (100), Expect = 7e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 164 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSI----NVKTD 319
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 320 PNTGRSRGFAFIVFK 364
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/99 (26%), Positives = 51/99 (51%)
Frame = +2
Query: 164 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 343
G + + + E+P + + L+VGGL+ ++++RD F A+GEI SI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 344 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 460
AF+ + + E +K A + N ++ ++ K G+
Sbjct: 265 CAFVTYTSREGAEK---AAQELSNRLVINGQRLKLTWGR 300
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/61 (32%), Positives = 38/61 (62%)
Frame = +2
Query: 179 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 358
+N A G D + LFV L++E+++ +++ F +YG I +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 359 F 361
+
Sbjct: 186 Y 186
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 428 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
DP + +FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI +
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 182 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 349
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 350 FIVFK 364
F+ F+
Sbjct: 184 FVSFR 188
Score = 42.7 bits (96), Expect = 2e-04
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Frame = +2
Query: 197 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
PG D R ++VG + + T+ L++ F G + S + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 371 ESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 529
+ + G H KV+ ++ + H IFVG LS E++D + FS +
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYP 163
Query: 530 TILXVEMPFDKTKNQXKGFCFITF 601
T + +D+ + +GF F++F
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSF 187
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 167 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 343
D +D + EAP + ++VG L+ E + +L HF + G V + R +G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKG 298
Query: 344 FAFI 355
F F+
Sbjct: 299 FGFV 302
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 200 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 379
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 380 DKVMAA 397
D AA
Sbjct: 414 DIACAA 419
Score = 33.9 bits (74), Expect = 0.093
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+IFVGGL ++ ++R FG + ++ D+ KG+ F +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 200 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 379
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 380 DKVMAA 397
D AA
Sbjct: 414 DIACAA 419
Score = 33.9 bits (74), Expect = 0.093
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+IFVGGL ++ ++R FG + ++ D+ KG+ F +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 200 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 379
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 380 DKVMAA 397
D AA
Sbjct: 414 DIACAA 419
Score = 33.9 bits (74), Expect = 0.093
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+IFVGGL ++ ++R FG + ++ D+ KG+ F +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 191 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK- 364
E DD +R LF+ L ++ T +E++ F +GE+ S+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 365 APESIDKVMAA 397
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 161 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 341 GFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 451
GFAF+ F E +++ + T+ +++ K+A R
Sbjct: 62 GFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 419 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFIT 598
+K +K+ + V GL I++ ++ FSE G + + +K ++ +GF F+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 599 F 601
F
Sbjct: 68 F 68
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
IFV + + D + F++FG +L + D Q G +I F
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
LFVG LS TT+ LR+ YG I ++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 401 EHTI 412
H++
Sbjct: 126 HHSL 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Frame = +2
Query: 170 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 331
S+D S + GR ++ + V G+ ET ++++ + FG +GEI ++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 332 RSRGFAFIVFKAPESIDKVMAA 397
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
I V G+ E +++I N F +FG I + + D+ KG+ I +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEY 143
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 203 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 383 KVM 391
+ +
Sbjct: 269 RAI 271
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 467 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
V LS + + ++ F FG + V + D+ +GF F+ F
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNF 261
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +2
Query: 170 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 349
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 350 FIVFKAPESIDKVMAAGEH 406
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L V GL + ++ LR F + I + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 401 EHTI---NNKKVDPKKAKARHG 457
T N K + AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ V GLS + +++++ +E+G + V + ++ +GF FI F
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 170 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 349
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 350 FIVFKAPE 373
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 194 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIXSINVKTDPNTGRSRGFAFIVFKA 367
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 368 PESIDKVM 391
E + +
Sbjct: 246 REEAENAI 253
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 380 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 559
+K +A E T +K + + K+FV L +S ++I F + GT+ VE+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 560 KTKNQXKGFCFIT 598
K + +GF F+T
Sbjct: 130 K-DGKNRGFAFVT 141
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 41.9 bits (94), Expect = 4e-04
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 388
D +FVG L+ + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 389 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 490
M + + ++ P + +G GG L S +
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 491 SDDEIRNFFSEFGTILXVEMPFDK 562
+D++++ FSEFG I+ V++P K
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVGK 341
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 125 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 305 NVKTDPNTGRSRGFAFIVFK--APESIDKV 388
+ G+ GF V + A E+++K+
Sbjct: 336 KIP----VGKGCGFVQFVNRPNAEEALEKL 361
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Frame = +2
Query: 290 EIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM-----AAGEHTINNKKVD------PK 436
EI S+ V + + G S G+ F+ F++ + DKV+ A +T +++ +
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189
Query: 437 KAKARHG---KIFVGGLSSEISDDEIRNFFSE-FGTILXVEMPFDKTKNQXKGFCFITF 601
K +G IFVG L+ ++SD + FSE + ++ ++ D + KG+ F+ F
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 385
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADD 62
Query: 386 VMAAGE-HTINNKKVDPKKAKARHGKIFVG 472
+ + +I + V R G++ G
Sbjct: 63 AIEDMDGKSIGGRAVRVNDVTTRGGRMNPG 92
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L+VG L+ ETT+ +L + FG YG+I I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 401 E 403
E
Sbjct: 71 E 71
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTI 535
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 41.1 bits (92), Expect = 6e-04
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Frame = +2
Query: 185 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 362 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 511
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 512 FFSEFGTI 535
F +G I
Sbjct: 289 LFGAYGEI 296
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L + + ++ EL FGAYGEI I + PN R + + E+ K +
Sbjct: 272 LVIFNVDTTVSNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRS 329
Query: 401 EHTINNKKVDPKKAKARHG---KIFVGGLSSEISDDEIRNFFSEFGT 532
E I K + K +R G ++ V S ++ E+ NF+++ G+
Sbjct: 330 E--IGGKCI--KLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGS 372
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 41.1 bits (92), Expect = 6e-04
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Frame = +2
Query: 185 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 362 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 511
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 512 FFSEFGTI 535
F +G I
Sbjct: 302 LFGAYGEI 309
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L + + ++ EL FGAYGEI I + PN R + + E+ K +
Sbjct: 285 LVIFNVDTTVSNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRS 342
Query: 401 EHTINNKKVDPKKAKARHG---KIFVGGLSSEISDDEIRNFFSEFGT 532
E I K + K +R G ++ V S ++ E+ NF+++ G+
Sbjct: 343 E--IGGKCI--KLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGS 385
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVF 361
D +FVG L+ + +D L + F G Y + V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +2
Query: 395 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 562
AG H N D ++ + IFVGGL ++++++++ FS+FG ++ V++P K
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/96 (22%), Positives = 43/96 (44%)
Frame = +2
Query: 134 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 313
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 314 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 421
+G F+ F +S ++ + T+ K
Sbjct: 360 V------GKGCGFVQFANRQSAEEAIGNLNGTVIGK 389
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
LFVG L W TTD EL YG + + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FVG L +D E+ ++G + V+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++VGGL+ E+++ + F FG I V+ P D+ + + F F+TF
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
Score = 34.3 bits (75), Expect = 0.070
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
L+VGGL+ E + L F +G+I + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+++G +S+ TT+++L + F GEI I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++G +S +++++ FS G I + M DK GFCF+ F
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLF 82
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 191 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 319
E P + + L+VGGL+ ++++ DHF AYGE+ SI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 164 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 343
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 344 FAFIVFKAPESIDKVM 391
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 416 NKKVDPKKAKARHGK--IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFC 589
++K ++RH + + V LS + ++ F FG + + D+ + +GF
Sbjct: 159 DRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFG 218
Query: 590 FITF 601
F++F
Sbjct: 219 FVSF 222
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 401 EHTINN 418
+ I N
Sbjct: 119 DAKILN 124
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +2
Query: 161 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 341 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 451
G+ F+ F P +AA +N K V + K R
Sbjct: 179 GYGFVSFLNPAD----LAAALKEMNGKYVGNRPIKLR 211
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++F G L +E++DD + F+ F T ++ DK + KG+ F++F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KI V L S+D ++ FS FG I V++ D+ + KG+ FI F
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQF 88
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 38.7 bits (86), Expect = 0.003
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI------- 379
++V L TD +L+ FG +GEI S V D G+SR F F+ F+ E+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 380 ------DKVMAAGEHTINNKKVDPKKAK-----------ARHG-KIFVGGLSSEISDDEI 505
+K + G + + KAK R G ++V L + + ++
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 506 RNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
FSEFGTI ++ + KG F+ F
Sbjct: 240 EELFSEFGTITSCKV-MVHSNGISKGVGFVEF 270
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 428 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
DP + G +FV L I + ++ + FS FG +L ++ D KG+ F+ F
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQF 78
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
LFVG L W TTD E+ YG + I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FVG L +D EI + S++G + ++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +2
Query: 170 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 349
S+DH S+ G L + L + +LRD F +G + I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 350 FIVFKAPESIDKVMAAGEHTI 412
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Frame = +2
Query: 161 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
GG ++ P ++ L++G + + E+ F +G + + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 341 GFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKKAK 445
F FI F+ PE + +AAG EH + ++P+ K
Sbjct: 102 HFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPENVK 142
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++G + + EI FFS+FGT+ V + +K + K F FI F
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQF 108
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 143 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 319
G GGGD P R + ++ V GL + ++L+DH GE+ V D
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRD 154
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 143 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 319
G GGGD P R + ++ V GL + ++L+DH GE+ V D
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRD 154
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 452 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
HG + V + + +E+R F FG + V +P D Q +GF F+ F
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 34.7 bits (76), Expect = 0.053
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 170 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 347 AFIVF 361
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 170 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 347 AFIVF 361
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 170 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 347 AFIVF 361
A +V+
Sbjct: 131 AEVVY 135
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 311 KTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----KIFVGG 475
+ +PN +R + KAPES G +++ D + ++ G K+++
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPES-----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 476 LSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
L + +++I+ F+E G + + FD++ + KG + +
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVY 135
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 170 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 319
S ++++ AP R D ++ V GL + ++L+DH G++ V D
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPD 143
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 206 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
D R +F+G L ++ D+E+ F I ++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 374 SIDKVMAAGEHTINNKKVDPKKAK 445
+ + V+ G + +++ + K
Sbjct: 340 AANLVLKKGYLKLRERELRISRVK 363
Score = 31.9 bits (69), Expect = 0.37
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 40/174 (22%)
Frame = +2
Query: 200 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIXSINVKTDP--------------- 322
G DD+ KL FVG L + K + F +GE+ S+ +++ P
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 323 --NTGRSRGFAFIVFKAPESIDKVMA------AGEHTINNKKVDPKKAKARHG------- 457
N S A++VF+ +S +A G H ++ P+K + H
Sbjct: 222 QINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDP 281
Query: 458 --KIFVGGLSSEISDDEIRNFFSE----FGTILXVEMPFDKTKNQXKGFCFITF 601
+F+G L ++ D+E+ F+ +I V + D N KG ++ F
Sbjct: 282 KRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLF 335
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 191 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 371 ESIDKVM 391
+ K +
Sbjct: 295 DETKKAL 301
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
++ LFV L +ET + D F GE+ + + + G+ G F+ F + ++ +
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEAL 184
Query: 392 AA--GEHTINNK 421
GE NNK
Sbjct: 185 QKKNGECLDNNK 196
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 425 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ K+A R +FV L E I +FF + G ++ V++ K + G F+ F
Sbjct: 117 ISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQL-IVNLKGKLVGCGFVEF 174
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.013
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Frame = +2
Query: 146 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 322
N NG G + +H E P R LFV ++ D EL F YG+I +T
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDI-----RTLY 198
Query: 323 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 472
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 473 GLSSEISDDEIRNFFSEFGTI 535
L IS+D++ F G I
Sbjct: 259 NLDPSISNDDLHGIFGAHGEI 279
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.013
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Frame = +2
Query: 146 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 322
N NG G + +H E P R LFV ++ D EL F YG+I +T
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDI-----RTLY 198
Query: 323 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 472
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 473 GLSSEISDDEIRNFFSEFGTI 535
L IS+D++ F G I
Sbjct: 259 NLDPSISNDDLHGIFGAHGEI 279
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 125 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 305 NVKTD 319
V D
Sbjct: 149 QVYRD 153
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 125 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 305 NVKTD 319
V D
Sbjct: 149 QVYRD 153
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 361
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 125 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 304
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 305 NVKTD 319
V D
Sbjct: 149 QVYRD 153
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 191 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKA 367
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 368 PESIDKVM 391
+ + +
Sbjct: 241 KKQAEAAL 248
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 35.9 bits (79), Expect = 0.023
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Frame = +2
Query: 191 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
E P D + V LS T ++ F ++ S+ + + + G+ G+ F+ F +
Sbjct: 150 ETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASA 208
Query: 371 ESIDKVMAA--GEHTINNKKVDPK--------KAKARHGKIFVGGLSSEISDDEIRNFFS 520
+K + GE+ N+K + K + A +FV L I +I NFF
Sbjct: 209 YGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFK 268
Query: 521 EFGTILXVEMPFDKTKNQXKGFCFITF 601
+ G ++ V + ++ + G+ F+ F
Sbjct: 269 DVGEVVHVRL-IVNSQGKHAGWGFVEF 294
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.5 bits (78), Expect = 0.030
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 401 EHTINNKKVDPKKAKA 448
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 434 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.5 bits (78), Expect = 0.030
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 401 EHTINNKKVDPKKAKA 448
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 434 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 233 GLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 412
GLS TTD+ LR F + + D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 413 NNKKV 427
N ++
Sbjct: 132 VNGRL 136
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.1 bits (77), Expect = 0.040
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 146 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 316
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 317 DPNTGRSRGFAFIVF 361
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +2
Query: 392 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKN 571
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 572 QXKGFCFITF 601
KG+ F+ +
Sbjct: 519 LSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.1 bits (77), Expect = 0.040
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 146 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 316
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 317 DPNTGRSRGFAFIVF 361
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +2
Query: 392 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKN 571
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 572 QXKGFCFITF 601
KG+ F+ +
Sbjct: 519 LSKGYGFVKY 528
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 106
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 125
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 35.1 bits (77), Expect = 0.040
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 125 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXS 301
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 302 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 409
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 35.1 bits (77), Expect = 0.040
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 125 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXS 301
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 302 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 409
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 34.7 bits (76), Expect = 0.053
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.070
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 224 FVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 403
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 404 HTI 412
H +
Sbjct: 299 HDV 301
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.9 bits (74), Expect = 0.093
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 428 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG---TILXVEMPFDKTKNQXKGF 586
+P++ + GKIFVG L + I E FF +FG ++ ++ + KN GF
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGF 211
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXS-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
K+FVG L E + F +G I + I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.9 bits (74), Expect = 0.093
Identities = 21/87 (24%), Positives = 43/87 (49%)
Frame = +2
Query: 167 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 346
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 347 AFIVFKAPESIDKVMAAGEHTINNKKV 427
AFI F++ +S + M + + +K+
Sbjct: 60 AFIEFESADSAGRAMLHMDGRLIGQKI 86
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+++G + +SD + + + G ++ + +P DK ++ KGF F +
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEY 55
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 239 SWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 430
++++ D+F +G + + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 431 PKKAKARHGKI 463
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 287 GEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 394
G + ++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 203 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 371 ESID 382
D
Sbjct: 55 RDAD 58
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 152 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXSINVKTDPNT 328
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 329 GRSRGFAFIVFKAPESIDKVMAA 397
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 152 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXSINVKTDPNT 328
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 329 GRSRGFAFIVFKAPESIDKVMAA 397
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
++ VGGL + D++ FS GT+ VE F +TK + F +I F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF 54
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 251 TDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK- 424
TD+++ ++FG +G + + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 425 -VDPKKAKAR 451
V P K K R
Sbjct: 387 LVKPYKEKGR 396
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 482 SEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
S +D+++ N+F FG + V +P+ Q + F F+TF
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTF 363
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 203 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 370
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 371 ESID 382
D
Sbjct: 55 RDAD 58
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 394
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 218 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 394
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXK 580
+FV G S +S+ ++ FSEFG + E F +KN K
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 31.1 bits (67), Expect = 0.65
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 402 NTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQM---MKSETSSVNLELSXKWRCPLTKQR 569
NT + + + LK G +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 547 NTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 30.7 bits (66), Expect = 0.87
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 430
D+++ +F +G + + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 431 PKKAKARHGKI 463
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 482 SEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
S D+++ +FS FGT+ V +P+ Q + F F++F
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSF 304
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 430
++++ ++F +G + + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 431 PKKAKARHGKI 463
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 30.7 bits (66), Expect = 0.87
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +2
Query: 203 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 382
RD+ R LFV GL + +E+ + F + + ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 383 KVMAAGEHTINNKKVDPKKAKARH 454
VM H +N D +K H
Sbjct: 88 AVM----HALNGMVFDLEKHSTLH 107
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ V L + +++R F +FG + + +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = +2
Query: 221 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 400
L V L+ ++++L + FG YGEI I + PN R F+ F S D + A
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA- 277
Query: 401 EHTINNKKVDPKKAKARHGK 460
+N ++ K+ K H +
Sbjct: 278 ---LNRTEIAGKRIKLEHSR 294
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 364
R +FVG +ET +L F YG + +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 161 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIXSINVKTDPNTGR 334
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 335 SRGFAFIVFKAPESIDKVMAAGEHT 409
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF 601
+ V L + +++R F +FG + + +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 464 FVGGLSSEISDDEIRNFFSEFGTILXVEMPF 556
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 398 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 535
GE NN + + + + VG +SS + D E++ F +FG I
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDI 243
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 140 NGNAENGG--GDSQDHNSAEAPGRDDDR 217
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +2
Query: 212 DRKLFVGGLSWETTDKELR----DHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 379
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NET 173
Query: 380 DKVMAAGEHTINNKKVD 430
+ G H + +K+D
Sbjct: 174 KGLTLNGSH-LGGRKID 189
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 98 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 217
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 95 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 187
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 188 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 313
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 188 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 313
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 140 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 271
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 461 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGFCFITF*I*XSCK 622
+FV L+ D+++ FS FGT++ ++ D + FI F SC+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCE 298
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 179 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 340
+N A G D + LFV L++E+++ +++ F +YG I + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 263 LRDHFGAYGEIXSINVKTDPNTGRSRGF 346
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 248 TTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 427
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 81 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 129
Query: 428 D 430
D
Sbjct: 130 D 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 248 TTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 427
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 428 D 430
D
Sbjct: 156 D 156
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 92 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 223
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 254 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
++++RDHF YGEI SI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 263 LRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 391
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 263 LRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 427
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 215 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 373
R L+VG L ++EL D F +GE+ S+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 458 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQXKGF 586
KIF+GG S IS + + S FG + + NQ F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +2
Query: 374 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 553
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 554 FDKTKNQXKGFCFITF 601
+++ Q ++TF
Sbjct: 61 --RSETQESQVAYVTF 74
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +2
Query: 374 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 553
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 554 FDKTKNQXKGFCFITF 601
+++ Q ++TF
Sbjct: 61 --RSETQESQVAYVTF 74
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 227 VGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 406
V +S TD++L++ F G+I + ++T T R++ A++ FK + + +
Sbjct: 8 VSNVSLGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGA 64
Query: 407 TINNKKV 427
TI + V
Sbjct: 65 TIVDSSV 71
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 260 ELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 367
++R G +GEI + + D SRG A++ FKA
Sbjct: 3 KIRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEFKA 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,643
Number of Sequences: 28952
Number of extensions: 279883
Number of successful extensions: 1414
Number of sequences better than 10.0: 237
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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