Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E02
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826...    31   0.41 
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190...    29   1.6  
03_03_0044 - 14021874-14022050,14022235-14022390,14023024-140232...    26   8.7  

>04_01_0628 -
           8266494-8266501,8266578-8266875,8268055-8268313,
           8268892-8269052,8269553-8269884,8270947-8271265,
           8271335-8271420,8271600-8271684
          Length = 515

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 95  ESQLKGLAKYFNSQTNRGRLNTARA-TYAVMGAVILYF 205
           +  L+G   Y++ Q N  RLN   A T AV+GA IL +
Sbjct: 101 DRSLRGTVVYYDGQMNDSRLNVGLACTAAVVGAAILNY 138


>08_01_0233 +
           1876940-1877509,1907940-1908195,1908290-1908589,
           1908777-1908939,1908958-1908994,1910122-1910742
          Length = 648

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 59  FQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNT 160
           F ++M GD  VD+   KGL  Y N     GRL T
Sbjct: 465 FNLKMKGDDGVDKDFSKGLLPY-NVVCRTGRLET 497


>03_03_0044 -
           14021874-14022050,14022235-14022390,14023024-14023203,
           14023816-14024074,14024178-14024416,14025180-14025260,
           14025320-14025328
          Length = 366

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 66  SGWPETLLSMNPSSKA*QNTSTVRQTEED 152
           SGW ETLL+ +P+  +     ++R+  ED
Sbjct: 131 SGWFETLLNSHPNVSSNGEIFSIRERRED 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,099,624
Number of Sequences: 37544
Number of extensions: 108577
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)