Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E02
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put...    28   1.8  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   3.2  
At5g49670.1 68418.m06150 hypothetical protein                          26   7.4  
At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin...    26   7.4  
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin...    26   7.4  
At3g14540.1 68416.m01842 terpene synthase/cyclase family protein...    26   9.7  

>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
           putative similar to glycerol-3-phosphate dehydrogenase
           GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
           [GI:1020315], Rattus norvegicus [SP|P35571]; contains
           Pfam profile PF01266 FAD dependent oxidoreductase
          Length = 629

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 95  ESQLKGLAKYFNSQTNRGRLNTARA-TYAVMGAVIL 199
           +  L+G   Y++ Q N  RLN   A T A+ GA +L
Sbjct: 217 DKNLRGTVVYYDGQMNDSRLNVGLACTAALAGAAVL 252


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 265 YRNMXINFACNSFLGFRFQCEVK 197
           YRNM  +    +F GFR++C  K
Sbjct: 422 YRNMHCSTCSRAFTGFRYKCSEK 444


>At5g49670.1 68418.m06150 hypothetical protein 
          Length = 1184

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 183 ITAYVALAVFNLPLFV*LLKYFAKPLSW 100
           + A++ + +F + LFV LL  F K L W
Sbjct: 1   MAAFLVMFIFTIALFVALLWVFFKSLPW 28


>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
           dehydrogenase, putative / AK-HSDH, putative similar to
           gb|X71364 [PIR|S46497] aspartate kinase / homoserine
           dehydrogenase from Arabidopsis thaliana
          Length = 916

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 112 LSKILQQSDKQRKIKYGQSHICSNGSSHPLLHTET*IQEMNYKQNLLXCFCKGLLSYIVH 291
           L + L+  D QRK      +  + G+  P++ T   + E   K   +   C G LSY+ +
Sbjct: 680 LDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFN 739

Query: 292 N 294
           N
Sbjct: 740 N 740


>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
           dehydrogenase, putative / AK-HSDH, putative similar to
           gb|X71364 [PIR|S46497] aspartate kinase / homoserine
           dehydrogenase from Arabidopsis thaliana
          Length = 859

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 112 LSKILQQSDKQRKIKYGQSHICSNGSSHPLLHTET*IQEMNYKQNLLXCFCKGLLSYIVH 291
           L + L+  D QRK      +  + G+  P++ T   + E   K   +   C G LSY+ +
Sbjct: 680 LDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFN 739

Query: 292 N 294
           N
Sbjct: 740 N 740


>At3g14540.1 68416.m01842 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana]
          Length = 602

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 80  DSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVMGA 190
           D SV ES L GL  YF  Q + GR+  A+    ++ A
Sbjct: 317 DRSV-ESHLGGLGPYFEPQYSLGRIIVAKTIMIIVVA 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,953,769
Number of Sequences: 28952
Number of extensions: 95231
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)