Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D24
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    35   0.058
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    35   0.058
U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical p...    28   5.0  

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 307 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 167
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 60


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 307 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 167
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 189


>U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical
           protein AH9.3 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 244 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKVNN 146
           E GS+P+  + T    P+K S D +A +N+V++
Sbjct: 44  EAGSSPKATTTTDGEVPEKDSADENAEKNQVDS 76


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 277 PSRKHFLFICVEPGSTPRCP-SGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKELKL 104
           P+R     +    G++P+ P  G+P  SPQ   P  +A + +  + K       K+LKL
Sbjct: 193 PNRSTLPSVETSSGNSPQTPYPGSPEASPQPSPPKNTASELQKLSIKELEANKDKKLKL 251


>U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical
           protein F09E5.2 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
 Frame = -3

Query: 292 ALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSARQNK----VNNT----KA 137
           A+L +P R+HF  + VE         GTP ++   G P  S R N+    V+ T      
Sbjct: 302 AVLYTPDREHFGIVPVE-----AMYLGTPVIAVNTGGPCESVRNNETGFLVDQTAEAFAE 356

Query: 136 KVIQPMKELKLFARATE 86
           K+I  MK+ +++ R +E
Sbjct: 357 KMIDLMKDEEMYRRMSE 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,422,190
Number of Sequences: 27780
Number of extensions: 296610
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)