Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D24
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.9  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   1.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 214 GTPSMSPQKGSPDTSARQNKVNNTKAKVIQP 122
           GTP   P  G P    +Q+ + N    + QP
Sbjct: 20  GTPKEEPGPGLPGQEVKQSFLKNQLQALFQP 50


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 214 GTPSMSPQKGSPDTSARQNKVNNTKAKVIQP 122
           GTP   P  G P    +Q+ + N    + QP
Sbjct: 20  GTPKEEPGPGLPGQEVKQSFLKNQLQALFQP 50


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 214 GTPSMSPQKGSPDTSARQNKVNNTKAKVIQP 122
           GTP   P  G P    +Q+ + N    + QP
Sbjct: 20  GTPKEEPGPGLPGQEVKQSFLKNQLQALFQP 50


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 11  HDRGTDSVEPLQCKLLTFNSVYNDSFCCA 97
           ++   D    + C LL+F    NDS C A
Sbjct: 34  NEERADRHRRVTCDLLSFKGQVNDSACAA 62


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 11  HDRGTDSVEPLQCKLLTFNSVYNDSFCCA 97
           ++   D    + C LL+F    NDS C A
Sbjct: 34  NEERADRHRRVTCDLLSFKGQVNDSACAA 62


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 11 HDRGTDSVEPLQCKLLTFNSVYNDSFCCA 97
          ++   D    + C LL+F    NDS C A
Sbjct: 9  NEERADRHRRVTCDLLSFKGQVNDSACAA 37


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -3

Query: 238 GSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKELK 107
           G T RC +G P  S +   P     +  V ++      PM   K
Sbjct: 294 GHTVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTK 337


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 353 NSARGASSHRRYRQHGSSGW 294
           N++RG S       HGS  W
Sbjct: 392 NNSRGHSGQSSSHHHGSKSW 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,301
Number of Sequences: 438
Number of extensions: 3366
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)