Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D24
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger) fa...    32   0.38 
At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,...    29   2.0  
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof...    28   6.2  
At1g64300.1 68414.m07287 protein kinase family protein contains ...    28   6.2  
At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO) ident...    27   8.2  

>At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger)
           family protein various predicted proteins, Arabidopsis
           thaliana ; contains Pfam profile PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 462

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 22/64 (34%), Positives = 29/64 (45%)
 Frame = -3

Query: 322 ATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNT 143
           A G    A+G+L+ SP  K F F    P S+PR      SMSP      T+ +  K  N 
Sbjct: 57  AHGDFLRANGSLIHSPVSKRFKF---SPMSSPRTGRRVGSMSPSSSRNRTNQKNFKNRNH 113

Query: 142 KAKV 131
            A +
Sbjct: 114 SADI 117


>At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,
           putative strong similarity to beta-galactosidase
           precursor (EC 3.2.1.23) (Lactase) SP:P49676 from
           [Brassica oleracea]
          Length = 769

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 256 FICVE--PGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKELKLFARATET 83
           ++C E   G  P      P+M  +  +P      N++ N   K+++ MKE KLFA     
Sbjct: 62  YVCAEWNYGGFPVWLHNMPNMKFRTVNPSF---MNEMQNFTTKIVKMMKEEKLFASQGGP 118

Query: 82  VVIDRIE 62
           +++ +IE
Sbjct: 119 IILAQIE 125


>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 629

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 573 LSKQKLRXCRVLCGNXVTVCLFDCD 647
           +SKQKL+ CR+L     ++C  +CD
Sbjct: 347 ISKQKLKDCRLL-ETPQSICFLECD 370


>At1g64300.1 68414.m07287 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 717

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 241 PGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKEL 110
           PGS+P  P  TP +S    SP   +  NK N      + PM  L
Sbjct: 657 PGSSPIKPRSTPKVSSPL-SPFGRSSSNKANKDTRLPLSPMSPL 699


>At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO)
           identical to Zinc finger protein CONSTANS SP:Q39057 from
           [Arabidopsis thaliana]
          Length = 373

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 250 CVEPGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKELK 107
           CV   S PR P GT    P   S   +  Q    + +A+V++  ++ K
Sbjct: 271 CVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREARVLRYREKRK 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,504
Number of Sequences: 28952
Number of extensions: 260776
Number of successful extensions: 701
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)