Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D19
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 31 0.16
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 31 0.16
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 29 0.64
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 28 1.1
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 26 3.4
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 3.4
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 6.0
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 7.9
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 7.9
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 25 7.9
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 30.7 bits (66), Expect = 0.16
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 178 FWKNLRPNVQRIYF-TFPPSSVISALSEILNS 86
FW+ LR V ++ T PP VI+ LSEI+ +
Sbjct: 167 FWQPLRVYVDMVFLHTLPPRQVINGLSEIIKT 198
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 30.7 bits (66), Expect = 0.16
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 364 KTVNCPICNXSFENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKL 528
+TV C +C+ +N E H CL ++ E ++ LL NE+R ++ L
Sbjct: 180 ETVLCRVCDHEIQNWYFEHHTELCLLIHHAEA--RAQEANDLL--NEQRNALQSL 230
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 0.64
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 370 VNCPICNXSFENTEIEEHVNKCLFLNSCEKSNS 468
V+CP C+ + +I +H++ CL S S+S
Sbjct: 157 VHCPACSNLVPHNQINQHLDSCLNSPSSPSSSS 189
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 367 TVNCPICNXSFENT--EIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKL 528
TV CP+C + EN + +HV+ CL + E S +P K++K L
Sbjct: 489 TVPCPVCQKNIENELGILNQHVDLCL---NVETVKSLINTDHTANPTIKKRKSNTL 541
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 376 CPICNXSFENTEIEE--HVNKCLFLNSCEKSNSK 471
CPIC + E+ ++ HVN CL + E + K
Sbjct: 109 CPICGITLESLTVDANIHVNDCLDGRTTEAVSKK 142
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 167 VLPKSALKKSYX-NITTILPSLFIPSPFFVSS 259
VLP ++ SY N T LPS F PSP S
Sbjct: 285 VLPPASTFPSYNSNFTGFLPSSFNPSPLMTLS 316
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.4 bits (53), Expect = 6.0
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 400 ENTEIEEHVNKCLFLNSCEKSNS--KRQGQQLLSPNEKRKK-VEKLTALPPNLKSSQSQK 570
EN E H N + + + SN+ R L+P E+ K VE PP KSS++ K
Sbjct: 542 ENEE-GNHSNATCTIKNDDLSNTLNNRAANTKLNPKEEDKSTVESELKAPPKEKSSETSK 600
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 169 SSKKCTEKVLX*YNHHFTF 225
++KKC +K+L Y H TF
Sbjct: 306 TNKKCPQKMLQFYESHLTF 324
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 175 KKCTEKVLX*YNHHFTFFIYPIS--FFCIIPNFHMK 276
++C L HFT F +P S +FCI+ + +K
Sbjct: 595 QRCVSHFLAINESHFTDFFWPYSQFYFCILSSAIIK 630
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 187 QCTFWKNLRPNVQRIYFTFPPSSVISALSEILNS 86
Q FWK +RPN + + S V +AL NS
Sbjct: 99 QDDFWKGIRPNPTQNNLKYALSYVTNALFHFDNS 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,615
Number of Sequences: 5004
Number of extensions: 45228
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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