Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D19
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    30   1.1  
08_01_1049 - 10627636-10628041,10630972-10631115,10631205-106318...    28   4.6  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   6.1  
06_01_0241 - 1827161-1827624,1829688-1829828,1830566-1830593,183...    27   8.1  
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875...    27   8.1  

>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 340 DKNMXDCTKTVNCPICNXSFENTEIEEHVNKCLFLNSCEKSNSKRQGQ-QLLSPNEKRKK 516
           +  +  C +T+ C     S     +EE  +K   L++CEKSNS  + Q + ++ + K  +
Sbjct: 753 EMELAKCNETIECRKLEFSLMEKNMEELTSK---LSACEKSNSLTETQLKCMAESYKSLE 809

Query: 517 VEKL 528
           + KL
Sbjct: 810 LHKL 813


>08_01_1049 -
           10627636-10628041,10630972-10631115,10631205-10631869,
           10632709-10633110
          Length = 538

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 370 VNCPICNXSFENTEIEEHVNKCLFLNS-CE--KSNSKRQGQQLLSPNEKRKKVEKLTALP 540
           +  P      E   + E   + LF +S CE    N          P  KR+ +E  T L 
Sbjct: 306 IESPSPGCKLEPGAVSEASEQQLFCSSDCEGDAGNKSEDDHPSTEPQPKRRIIETSTPLT 365

Query: 541 PNLKSSQSQKI 573
           P L++ + QKI
Sbjct: 366 PVLRTVREQKI 376


>08_01_0114 -
           900530-901191,901269-901338,901536-901640,901721-901831,
           901912-902016,902245-902391,903273-903354,903445-903786,
           903873-904177,904259-904435,904799-904852,905171-905254,
           905855-905968,906048-906321,907552-907926,908003-908267,
           908352-908538,908615-909052,909895-909966,910037-910630,
           911471-911623,911700-911828,912326-912657,912705-912840,
           913046-913491,913580-915087,915169-915431,915622-915738,
           915844-916014,916743-916845,916930-916988,918360-918461,
           918560-918649,918727-918877,919745-919830,919926-920102,
           920915-920978,921859-922008,923132-923211,923311-923376,
           924540-924747,925502-925575,925761-925848,926140-926312,
           926541-926609,926698-926741,927074-927167,927290-927366,
           927475-927552,927992-928085
          Length = 3314

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 84  NNSPDKTRQNPKKLKLTKFTQLR 16
           NN+ D T+  PKKL L  F  L+
Sbjct: 841 NNTSDDTKSEPKKLALNMFASLK 863


>06_01_0241 -
           1827161-1827624,1829688-1829828,1830566-1830593,
           1830639-1830728
          Length = 240

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 361 TKTVNCPICNXSFENTEIEEHVN-KCLF--LNSCEKSNSKRQG 480
           TKTVNC I         I  H N  C+F  L +  +S+ KR+G
Sbjct: 17  TKTVNCSIIRAPAMTRLIVNHFNDTCIFHSLGAATESHYKRRG 59


>02_04_0657 +
           24786717-24786924,24786925-24786965,24787379-24787521,
           24787597-24787774,24788054-24788123,24788197-24788345,
           24788491-24788586,24789213-24789283,24789879-24789940,
           24790175-24790238,24790326-24790410,24790515-24790641,
           24790714-24790775,24790863-24790923,24790987-24791147,
           24791355-24791648
          Length = 623

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 554 LFKFGGKAVNFSTFFLFSFGDNSCCPCLFELDFSQELRKRH 432
           L +F G+  +F +F+ F    +S     F+  + + ++ RH
Sbjct: 157 LLRFSGQCTSFRSFYYFDMIVSSLVTSTFQATYLESVKSRH 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,616
Number of Sequences: 37544
Number of extensions: 236693
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)