Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D19
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-5|AAK39229.2|  666|Caenorhabditis elegans Hypothetical pr...    31   0.78 
U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical p...    27   9.5  
AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormo...    27   9.5  

>U41540-5|AAK39229.2|  666|Caenorhabditis elegans Hypothetical
           protein F35H12.4 protein.
          Length = 666

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 397 FENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKI 573
           FENT     VN+   LNS +K       + + S       ++ L+++ P +K SQS+ +
Sbjct: 295 FENTMFNICVNESAVLNSKDKVPYVFFAEVIRSSPNYNSNIKTLSSVEPRIKKSQSESV 353


>U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical
           protein C06A5.6 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
 Frame = -2

Query: 518 TFFLFSFGDNSC--CPCLFE------LDFSQELRKRHLFTCSSISVFSKLXLHIGQFTV 366
           T ++F   DN C  C  LFE       D  ++     L T   +SV  K   H+G+FT+
Sbjct: 146 TIYIFKHRDNKCYRCVILFEDGDNNVSDADRKYMVAFLDTPQVVSVKLKTLFHLGKFTI 204


>U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical
           protein T03G11.3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 367 TVNCPICNXSFENTEIEEHVNKCLFLNSCEK 459
           T  CPIC+  F  + +E+H + C  L S  +
Sbjct: 20  TFPCPICDRRFIKSSLEKHESACRKLASLHR 50


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 22  LCEFCQL*FLRVLTCFI 72
           +CEFCQ+ F +  TC+I
Sbjct: 248 ICEFCQMPFQKETTCYI 264


>Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical
           protein C33D9.3a protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 22  LCEFCQL*FLRVLTCFI 72
           +CEFCQ+ F +  TC+I
Sbjct: 251 ICEFCQMPFQKETTCYI 267


>Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.13 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -2

Query: 446 LRKRHLFTCSSISVFSKLXLHIGQFTVFVQSXIFLSFQFYEPGEETFKPSLIFSYFVFI 270
           L     F C   SVF+K+ L        +QS + L+  +  P      PSLI   F FI
Sbjct: 245 LSMSQFFACLIYSVFTKVFLEFQLNLSPLQSGLVLALSYTTPYACIAIPSLIIFTFRFI 303


>AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical
           protein T12B3.4 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 374 FTVFVQSXIFLSFQFYEPGEETFKPSLIFSYFVFI*KFGMIQKKEMG*IK 225
           F VFV   I    +  E G E    +L   ++ F+ ++GM+  KE+  +K
Sbjct: 219 FRVFVHVYIHHFDRIRELGAEPHANTLYKHFYFFVTEYGMVSTKELEALK 268


>AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 118 protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 340 DKNMXDCTKTVNCPICNXSFENTEIEEHVNKCLFLNSCEKSNSKR 474
           D N+     TV+C  C   F  +  E+   KC F N C   +  R
Sbjct: 22  DPNIQRHYGTVSCNGCKGFFRRSIWEKRTYKCSFHNQCSIEHKYR 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,800
Number of Sequences: 27780
Number of extensions: 254774
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)