Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D19
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 276 FHMKIWDDTKKGDGINKEGKMVV 208
           F  + W+  KK   +N EG+ +V
Sbjct: 17  FDSETWEAIKKDAAVNMEGQFLV 39


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 115 SLMREGK*NKCAGHWV 162
           +LM+E    K AGHWV
Sbjct: 65  ALMKERIRQKAAGHWV 80


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 115 SLMREGK*NKCAGHWV 162
           +LM+E    K AGHWV
Sbjct: 65  ALMKERIRQKAAGHWV 80


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 115 SLMREGK*NKCAGHWV 162
           +LM+E    K AGHWV
Sbjct: 65  ALMKERIRQKAAGHWV 80


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 276 FHMKIWDDTKKGDGINKEGKMVV 208
           F  + W+  KK   +N EG+ +V
Sbjct: 17  FDSETWEAIKKDAAVNMEGQFLV 39


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -2

Query: 311 TFKPSLIFSYFVFI*KFGMIQKKEMG*IKKVKWWLYXYK 195
           TF+P+   ++   +   G+ +K+EM     +K+W+  +K
Sbjct: 73  TFRPTAGMTFNGGVGPNGLTKKQEMLVRSAIKYWVERHK 111


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 552 LQVWRQSC*LFNFLS 508
           + VW  SC +F FLS
Sbjct: 276 IDVWMSSCSVFVFLS 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,974
Number of Sequences: 438
Number of extensions: 2913
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)