Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D18
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   3.8  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.8  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.6  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   6.6  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   8.7  

>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 62  LLSKCISNLCFLLFTILGISNVEASTGYDFGDFL 163
           L  + +  L FL FT+   SN E     D+ DF+
Sbjct: 3   LFPQILLRLLFLAFTLKSTSNAEKHDKVDYKDFV 36


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 71  KCISNLCFLLFTILGISNVEASTGYDFGDFL 163
           KC S LCF L T L  S  +     +FGDFL
Sbjct: 154 KCESILCFSLLTALLDSEADV---IEFGDFL 181


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 382 IXYSLEVSWIDDRYMGWNEI 323
           + Y++E SWI  +Y+G N I
Sbjct: 105 VLYNVEQSWIGYKYLGGNRI 124


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 76  YFQLVFPVIHNSWYKQCGSIYRL 144
           + Q+   + HNS +  C +IYRL
Sbjct: 853 FAQVFIDITHNSKFNSCCNIYRL 875


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 138 VDASTLLIPRIVNNRKHKLEIHFESNLKQI**IRSAV 28
           VD +TL   R    R  K+E+    +LK+I  IRS V
Sbjct: 203 VDQATLTHYRSDKERAEKIELRVHESLKRISCIRSKV 239


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 136 RCFHIAYTKNCE*QETQVGNT 74
           RCFH+ Y K+ E  ET V  +
Sbjct: 900 RCFHMGYLKSKEDFETSVSQS 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,518
Number of Sequences: 5004
Number of extensions: 33090
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)