Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D18
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)                 29   2.9  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)            27   9.0  

>SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)
          Length = 435

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 275 SCFSTRKSXINEYGKKYLIPSHIPVIYPRNFQAIXNKLKVL 397
           SC  +  S  N Y  ++L+P+H P  Y    Q    K++ L
Sbjct: 108 SCTGSVSSEANLYDPRFLVPTHPPKAYGAEKQEATKKMENL 148


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 260  HQNLPSCFSTRKSXINEYGKKYLIPSHIPV 349
            H N+PSC S   + +N Y    + P+  P+
Sbjct: 936  HNNVPSCQSATATPLNSYHSSLVNPTTTPI 965


>SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 750

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 138 VDASTLLIPRIVNNRKHKLEIHFESNLKQI 49
           +D S  L P + NN + KLE+H E  +K I
Sbjct: 333 LDISYNLGPGLTNNMRVKLEVHNELEIKTI 362


>SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)
          Length = 355

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 103 HNSWYKQCGSIYRLRLW 153
           H  WY  CG I  LR+W
Sbjct: 261 HCGWYPFCGQIRELRVW 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,674
Number of Sequences: 59808
Number of extensions: 220599
Number of successful extensions: 344
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)