Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D17
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   1.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.1  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   4.1  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   5.5  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 218 DLRADVNRLVLHSNLINLEVIID 286
           D  AD+ R+++HSNL+N E +++
Sbjct: 628 DKPADIKRVIVHSNLLNPEWLMN 650


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 201 LEDCIFLFSTKILSLKEIV 145
           L+DCIFLF   +L +K ++
Sbjct: 536 LKDCIFLFKNTLLGIKPVL 554


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = -3

Query: 289 NVDNHFQVYKVAVQHKAVNISTKINNRSRTRRLHLFIQHKNIKFERNCLKIGIL*SQNQY 110
           NV    +V+ V + H  +N ST +   +R      F++ ++ K  R  +KIGI    N  
Sbjct: 206 NVKGVTKVFNV-LDHPDINDSTCLTKEAR-----YFVKEQHKKLSRKPIKIGIPIDWNVS 259

Query: 109 TTHVKICNATTFQLKICMINYY 44
            TH  + +     + +   N Y
Sbjct: 260 ETHPNVLDKWNEFISLLKSNGY 281


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 114 WFWLYKIPIFRQFLSNLI 167
           WFW + I  F  F+SN I
Sbjct: 414 WFWNFMISFFTPFISNSI 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,950
Number of Sequences: 5004
Number of extensions: 48315
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)