Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D17
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   6.7  
U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 563 DNCIMSIHINPVKKLLYRICXEMNATNFS 649
           D C  ++ ++ V+  +YR+C EMN T F+
Sbjct: 601 DECTSAVSVD-VEGAMYRLCREMNITLFT 628


>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 220 INNRSRTRRLHLFIQHKNIKFERNCLKIGIL*SQNQYTTHVKICNATTFQLKIC 59
           + N     RL LF+   +I++      + +     + + H+ + N TTFQLKIC
Sbjct: 16  LKNMDSGMRLQLFVMFPSIQYLEKLFPLHVKYLTIK-SDHITV-NRTTFQLKIC 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,876,584
Number of Sequences: 27780
Number of extensions: 269368
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)