Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D17
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    28   4.7  
At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.2  
At1g48980.1 68414.m05491 hypothetical protein                          28   6.2  

>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 608 VTFLQDLYVCSLCNCLFG-SMFLSCLN 531
           +TF  D  +C+ CN   G   FL+CLN
Sbjct: 163 ITFQMDFRICAGCNMEIGHGRFLNCLN 189


>At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to At2g17970, At2g17960; contains
           PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 385

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 635 HSFXRIFCKVTFLQDLYVCSLCNCLFGS 552
           H F R FC V+FL +      CN LFGS
Sbjct: 343 HDFLRPFCTVSFLSE------CNILFGS 364


>At1g48980.1 68414.m05491 hypothetical protein
          Length = 264

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 635 HSFXRIFCKVTFLQDLYVCSLCNCLFGS 552
           H F R FC V+FL +      CN LFGS
Sbjct: 221 HDFLRPFCTVSFLSE------CNILFGS 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,644,561
Number of Sequences: 28952
Number of extensions: 234239
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)