Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D11
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    31   0.098
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   1.2  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   4.9  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   6.5  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   6.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   6.5  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   8.5  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   8.5  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 31.1 bits (67), Expect = 0.098
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 162 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 341
           S  ++  I  ++ R    P+      S +++ W +K    K    AP   L+   +VF Y
Sbjct: 25  SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82

Query: 342 AIN-YGRIKHHKNY 380
           A   Y  I+HH+ +
Sbjct: 83  ASEYYYHIRHHEEH 96


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 360 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVRTYVAISTRLD 241
           F+ S  H+ R    R ++RME C    ++  Y+   T LD
Sbjct: 27  FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLD 66


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 239 ESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMY 108
           ESS HG  SL  A +P T  V   L  W+ +F+    R+    Y
Sbjct: 24  ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +3

Query: 117 PYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVG 293
           PY P  Y G    PF Q +   +  + FG  S+   +VA    +    + +  + P+ + 
Sbjct: 48  PYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADYGQQQQQMYGYNGMMPQTMN 107

Query: 294 MAPFYQ 311
              F Q
Sbjct: 108 NTGFMQ 113


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 445 NKTDYILIHTATGTESVL*WY 383
           N  D I +H  T  ESV+ WY
Sbjct: 473 NNIDRISLHVQTTNESVIKWY 493


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  LIFRKVHRAFLKIWLSVITPRQYNPAVH 113
           L+F    +AF   W+ VIT R+Y P +H
Sbjct: 416 LLFMSEEKAF---WMLVITCRKYLPKMH 440


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 198 RTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYT 94
           R +NR    + D +E +V  ++ + RK   +QDYT
Sbjct: 88  RVSNRSHVRTIDGIEEKVHTNTFEPRKPKQKQDYT 122


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +1

Query: 244 EPGGDGNISTYNLRRLAWLHS--INYS--LAAWSSSM 342
           EP G+G+I+T N  RL  L S  +N++   AAW  ++
Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 214 LRLPWPELSVEPGGD 258
           +R+PWP L+VE  GD
Sbjct: 174 IRIPWPVLTVEFYGD 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,982
Number of Sequences: 5004
Number of extensions: 40858
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)