Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D11
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            31   0.71 
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        29   2.2  
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)             28   3.8  
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 27   8.8  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   27   8.8  

>SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +3

Query: 153 TPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMV 332
           T F + KL   G +  R +   +   G  SR W  ++ KYV  K   M PF+  +  +  
Sbjct: 2   TSFGETKLKNAGDYVVRNASLENMWRG-MSRVWNSYRAKYVTCKNARMTPFWHAVFVAAA 60

Query: 333 FFYAINYGRIK 365
             YAI Y  +K
Sbjct: 61  LNYAIEYNHLK 71


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 189 SWFGRRSKTPSAVAGAFSRAWWRWQHKYV 275
           SW  RRS   S     FS  +WRW H++V
Sbjct: 489 SW-SRRSAATSLDTKTFSIEYWRWHHRFV 516


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 201 RRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFY 308
           RRS   S     FS  +WRW H++       +  FY
Sbjct: 785 RRSAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820


>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
          Length = 594

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 150 DTPFSQLKLNEIGSWFGR 203
           D+P +QL LNEI SWF R
Sbjct: 423 DSPDTQLTLNEIYSWFTR 440


>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 260 PSPPGSTESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMYSRIILPWG 84
           P+PP S     HG  +   A E R    Q +LT W     I     +  +Y+ ++ P G
Sbjct: 462 PAPPSSKT---HGNFTEKVAHEHRQQNYQAELTRWQNTLDIHTKATLERIYNVLLFPDG 517


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 303 FYQLLVGSMVFFYAINYGRIKHHKNYKYH*R 395
           F+ L    M FFY   Y +I+HHK    H R
Sbjct: 184 FFVLPFALMCFFYLKIYLKIRHHKKQTAHMR 214


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 117 PYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWW 254
           P  P R Y  PD+PF+  +L    S   R+S +P+      +  +W
Sbjct: 259 PPAPVRLYMHPDSPFTGEQLLNRSS-RSRKSSSPTTTQTTMATIYW 303


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 90  RQYNPAVHGPYDPARYYGKP 149
           R + PAVH PY P   Y  P
Sbjct: 282 RPFPPAVHAPYHPPPAYSNP 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,020
Number of Sequences: 59808
Number of extensions: 325117
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)