Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...   149   3e-37
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.25 
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   1.8  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   1.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   4.1  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   4.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    26   5.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   5.5  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   7.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   9.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   9.5  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   9.5  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   9.5  

>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score =  149 bits (361), Expect = 3e-37
 Identities = 76/166 (45%), Positives = 110/166 (66%), Gaps = 7/166 (4%)
 Frame = +2

Query: 176 DKMYLTYTEWTTLYG--GKRSGTATEEDTT-FKRLPFDHCCLCLQPFDDPYCDADGN--- 337
           DK+Y+T TE + ++G  G  SG A +  TT +K+LPF++C L LQPF+ P C  D     
Sbjct: 6   DKLYITQTEHSGVHGWHGGMSGIAQKNSTTSYKQLPFNYCSLSLQPFNHPCCLVDETKQA 65

Query: 338 -VFELQAIIDFRKKFKINPVTGKKLDIKTLIKLNFFKNAEDAYHCPVLFKPFTKNSHIVA 514
            +F+ + I+ + +K   NP+ G+K  +  LIKL F KN+ + Y  PV  K FT+ SHIVA
Sbjct: 66  IIFDFRFIVPWLRKHGTNPINGQKASMSDLIKLKFAKNSAEEYCDPVTMKSFTRFSHIVA 125

Query: 515 IRTSGNVYSYEAVEQLNIKGKNWXDLVDDTPFAARNDIITIQXPQN 652
           IR++GN +S++ +E+LNIK K+W DLV++  F  R+DIITIQ P N
Sbjct: 126 IRSTGNCFSWDTIERLNIKPKHWRDLVNEEQF-TRDDIITIQDPHN 170


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 425 IKLNFFKNAEDAYHCPVLFKPFTKNSHIVAIRTSGNVYSYEAVEQLNIKGKN 580
           I +N   + E+     +LF    ++ H+V   T GNV  Y+A+    +KG++
Sbjct: 190 ISINCMMSRENVARTVLLFALDNQSIHLVVDMTDGNVPIYKAIAGFVVKGES 241


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 204 GQLSTVENVLERLLKKIQHLKDFHSITVVFVCSP 305
           G LS +E++L   L  I  LKD  +  +V  CSP
Sbjct: 231 GLLSHLEDILSEELVSITFLKDAVAYPIVSYCSP 264


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 461 YHCPVLFKPFTKNSHIVAIRTSGNVYSYEAVEQLNIKGKNWXDLVDDTPFAARNDIITIQ 640
           Y  PVL   FT N  +V I+ S  VY+ + +E +N    +  +++    FA   + +   
Sbjct: 85  YPSPVLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVI---AFAVHENYVAYN 141

Query: 641 XPQN 652
            P N
Sbjct: 142 SPTN 145


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 4   TLPFSKQDLAIKLN*NQNIFSSFLTLRELSNSVIYLTYLLNYNIVK 141
           +LP   Q L I ++ NQN F + L   E S S+ Y+ ++ +  + +
Sbjct: 313 SLPQHPQPLLICMSCNQNYFRNVLYQTERSKSLGYIRHIEHLQVFR 358


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 258 HLKDFHSITVVFVCSPLTIPTVMQTAMYLNCKLSLIFEKSLKL 386
           HL D +  T+   C    +       ++L CK S + E+S ++
Sbjct: 184 HLSDINDSTICVSCHQFRLHHSTNLRVHLRCKTSPVIEESKEI 226


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 435 TSSKMLKMPTTAQYYLNPLQKTRILLPYALVEMSTLMRLLNSSISKAK 578
           +S     +P    YY +PL    + LP + +  STL  LL+     A+
Sbjct: 27  SSDPNASLPPQTAYYASPLHANSVSLPPSHLPRSTLHPLLSQQQQPAQ 74


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +1

Query: 1   RTLPFSKQDLAIKLN*NQNIFSSFLTL----RELSNSVIYLTYLLNYNIVK 141
           +T PF    L+I L      FS+ L      R + NS +YL YLLN ++++
Sbjct: 84  QTKPFDSDTLSILLEILS--FSAHLLSHCANRSIYNSTVYLEYLLNSSVLE 132


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 190 NVYGMDNSLRWKTFWNGY 243
           N++G    +RWKT+ N Y
Sbjct: 52  NIFGQMQQVRWKTYGNEY 69


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 213 STVENVLERLLKKIQHLKDFHSITVVFVCSPLT--IPTVMQTAMYLNCK 353
           +T EN+      +I +    HS      C      +PT+ +T +Y NCK
Sbjct: 526 ATYENLKSNFSARIFNQLSVHSFFAEATCHLFLEKLPTITKTYVYSNCK 574


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 STVENVLERLLKKIQHLKDFH 275
           S+ E  L   L  +Q+LKDFH
Sbjct: 309 SSTEKFLSNTLSAVQNLKDFH 329


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 441 SKMLKMPTTAQYYLNPLQKTRILLPY 518
           SK+ K PT++ +Y+  L K +I+ P+
Sbjct: 131 SKVGKKPTSSDFYIPCLIKPKIITPF 156


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +2

Query: 344 ELQAIIDFRKKFKINPVTGKKLDIKTLIKLNFFKNAEDAYHCPVLFKPFTKNSHIVAIRT 523
           ++ A+    +  +I     K  + KT +++    +A  A    + F PF     + A+  
Sbjct: 75  QVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSAV-LDISFCPFQHGCKLAAVSA 133

Query: 524 SGNVYSYEAVEQLNI 568
              +  YEA+E  N+
Sbjct: 134 DATLRIYEAMEPGNL 148


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 204 GQLSTVENVLERLLKKIQHLKDFHSITVVFVCSPLTIPTVMQTAM 338
           G++   E  LE +L     L  FH +  VF  +  T+P+   +++
Sbjct: 50  GRVLRNETPLEEILHDATDLVTFHLVIAVFNSTSTTLPSATSSSV 94


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 470 PVLFKPFTKNSHIVAIRTSGNVYSYEAVEQLNI 568
           P + +  T   HI+A+ T+G VY++   +Q  +
Sbjct: 226 PEICQLATGTDHIIALTTTGKVYTWGNGQQFQL 258


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +2

Query: 431 LNFFKNAEDAYHCPVLFKPFTKNSHIVAIRTSGNVYSYEAVEQLNIKGKNWXDLVDDT 604
           L  FK + +AY   + F P +  + ++ +    N+Y + +  +  +  K   DL++ T
Sbjct: 94  LPLFKKSNNAYPSKIAFNPISNTTLVLFLTECCNIYLF-SENKKPVDQKIRSDLLEQT 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,245
Number of Sequences: 5004
Number of extensions: 49844
Number of successful extensions: 153
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)