Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D10
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 188 3e-48
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253... 41 7e-04
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 40 0.002
02_02_0082 + 6615408-6615606,6615736-6615866,6615957-6616072,661... 40 0.002
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304... 33 0.20
06_01_0077 + 626126-626137,626222-627421 30 1.4
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 29 2.4
08_01_0099 + 709377-709493,710055-710099,710482-710553,712413-71... 29 2.4
06_01_0426 + 3050332-3050526,3050864-3051116,3051923-3051980,305... 28 5.6
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 27 9.9
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 188 bits (459), Expect = 3e-48
Identities = 88/165 (53%), Positives = 117/165 (70%)
Frame = +2
Query: 152 MGKRQHQKDKMYLTYTEWTTLYGGKRSGTATEEDTTFKRLPFDHCCLCLQPFDDPYCDAD 331
MGK+QH KD+M++T TEW T +GG + E T FKRLPF C L PF+DP C AD
Sbjct: 1 MGKKQHSKDRMFITRTEWATEWGGAKQ---KEAGTPFKRLPFYCCALTFLPFEDPVCTAD 57
Query: 332 GNVFELQAIIDFRKKFKINPVTGKKLDIKTLIKLNFFKNAEDAYHCPVLFKPFTKNSHIV 511
G+VF+L +II + KKF +PVTG L + L+ L F KN++ + CPVL K FT+ +HIV
Sbjct: 58 GSVFDLMSIIPYIKKFGKHPVTGTPLKQEDLMPLTFHKNSDGEFQCPVLNKVFTEFTHIV 117
Query: 512 AIRTSGNVYSYEAVEQLNIKGKNWXDLVDDTPFAARNDIITIQXP 646
A++T+GNV+ YEA+++LNIK KNW +L+ D PF RND+ITIQ P
Sbjct: 118 AVKTTGNVFCYEAIQELNIKPKNWRELLTDEPF-TRNDLITIQNP 161
>06_03_0540 -
21923763-21923945,21924027-21924776,21924895-21925323,
21925509-21925619,21925715-21926040,21926130-21926251,
21926905-21927020,21927119-21927243,21927338-21927596
Length = 806
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +2
Query: 284 CCLCLQPFDDPYCDADGNVFELQAIIDFRKKFKINPVTGKKLDIKTLI 427
C + + DDPY ADG+ +E +AI + KK K +PVT ++L ++I
Sbjct: 742 CPILQEVMDDPYVAADGHTYEHRAIKAWLKKHKTSPVTKQRLQYLSII 789
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 149 KMGKR--QHQKDKMYLTYTEWTTL-YGGKRSGTATEEDTTFKRLPFDHCCLCLQPFDDPY 319
KM +R ++ D + TY E L YG +R + + K PFD CCLCL+P P
Sbjct: 1142 KMPQRHSKNNNDLAFFTYEEKRKLGYGTQRERLGKD---SIK--PFDACCLCLKPLIHPL 1196
Query: 320 CDADGNVFELQAIID 364
C G+ F + I++
Sbjct: 1197 CCPKGHTFCKECILE 1211
>02_02_0082 +
6615408-6615606,6615736-6615866,6615957-6616072,
6617109-6617230,6617353-6617645,6617774-6617875,
6620437-6620865,6621026-6621775,6621915-6622109
Length = 778
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 284 CCLCLQPFDDPYCDADGNVFELQAIIDFRKKFKINPVTGKKL 409
C + + +DPY ADG+ +E QAI + KK K++PVT + L
Sbjct: 710 CPIMQEVMNDPYVAADGHTYEQQAIKAWLKKHKVSPVTRRIL 751
>06_01_0424 +
3041296-3041860,3042701-3042786,3042858-3043147,
3043225-3043285,3043773-3043868,3044448-3044603,
3044811-3044987
Length = 476
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 284 CCLCLQPFDDPYCDADGNVFELQAIID-FRKKFKINPVTGKKLDIKTLIKLNFFKNA 451
C + + +DP ADG+ +E + I D FR+ +P+T +L+ K L+ ++A
Sbjct: 414 CPISHEVMNDPLMAADGHTYEAKFIRDWFRRGHNTSPITNVELEHKKLVPNRALRSA 470
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 428 KLNFFKNAEDAYHCPVLFKPFTK-NSHIVAIRTSGNVYSY 544
+L F +N ++ Y+C +L P T NSH++ I T +++ +
Sbjct: 166 RLPFSENCDEFYYCGILTAPITSPNSHLI-ISTQSSLFDW 204
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +3
Query: 204 GQLSTVENVLERLLKKIQHLKDFHSITVVFVCSPLTI--PTVMQTAMYLN---CKLSLIF 368
G ++T + R++K ++ +D HS+ +C LT+ PT+ +T + + C+ ++
Sbjct: 514 GLINTRRGAVIRIVKNLRICEDCHSVMKECICLRLTVFYPTLWKTVIASHSQECENIIVL 573
Query: 369 EKSLKL 386
K L+L
Sbjct: 574 RKMLEL 579
>08_01_0099 +
709377-709493,710055-710099,710482-710553,712413-712484,
712763-712839,713040-713169,713250-713360,713443-713568
Length = 249
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 278 DH-CC-LCLQPFDDPYCDADGNVFELQAIID-FRKKFKINPVTGKKLDIKTLIKLNFFKN 448
DH CC + L F DP G +E I+D + K +PVT + L+ L+ K
Sbjct: 174 DHLCCKITLDIFRDPVITPSGITYERAVILDHLHRVGKFDPVTRETLEPHQLVPNLAIKE 233
Query: 449 AEDAY 463
A A+
Sbjct: 234 AVHAF 238
>06_01_0426 +
3050332-3050526,3050864-3051116,3051923-3051980,
3052054-3052105,3052601-3052678,3053012-3053188,
3053594-3053806
Length = 341
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 272 PFDHCCLCLQPFDDPYCDADGNVFELQAIIDFRKK-FKINPVTGKKLDIKTLIKLNFFKN 448
PF C + L +DPY ADG+ ++ +AI + +PVT L+ LI ++
Sbjct: 264 PFT-CPIFLHVMEDPYITADGHTYDGEAIRAWLDAGHDTSPVTNLPLEHMELIPNRALRS 322
Query: 449 AEDAYH 466
A +H
Sbjct: 323 AIVWWH 328
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/96 (22%), Positives = 38/96 (39%)
Frame = +2
Query: 359 IDFRKKFKINPVTGKKLDIKTLIKLNFFKNAEDAYHCPVLFKPFTKNSHIVAIRTSGNVY 538
+D K + P KLD+ + +F A + Y + +++ ++
Sbjct: 238 LDLFKDYFATPYPLPKLDMVAIP--DFAAGAMENYGLVTYRETALLYDELLSSASNKQQV 295
Query: 539 SYEAVEQLNIKGKNWXDLVDDTPFAARNDIITIQXP 646
SY AVE L + NW +D+T R D + P
Sbjct: 296 SYLAVEALFPEWNNWTQFLDETTSGLRLDALAESHP 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,824
Number of Sequences: 37544
Number of extensions: 257432
Number of successful extensions: 654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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