Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D09
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    61   1e-10
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    58   6e-10
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    56   2e-09
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   2.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   2.8  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   8.4  

>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 34/95 (35%), Positives = 47/95 (49%)
 Frame = +3

Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSXXXXXXXXXXXX 302
           D+ + +T +K+ ++ KA  V VEP W  +FAKALEG ++++L+ NIGS            
Sbjct: 17  DEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGA 76

Query: 303 XXXXXXXXXXEEKXEXXKXXXXXXXXXXMGFGLFD 407
                     EEK E  K          MGFGLFD
Sbjct: 77  GAAAPAEAAEEEKKEEAK--EEEESDEDMGFGLFD 109


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 33/95 (34%), Positives = 47/95 (49%)
 Frame = +3

Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSXXXXXXXXXXXX 302
           D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGS            
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAA 76

Query: 303 XXXXXXXXXXEEKXEXXKXXXXXXXXXXMGFGLFD 407
                      E+ E  K          MGFGLFD
Sbjct: 77  APAAADGEAPAEEKEEAK--EEEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +3

Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS-XXXXXXXXXXX 299
           D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGS            
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGA 76

Query: 300 XXXXXXXXXXXEEKXEXXKXXXXXXXXXXMGFGLFD 407
                      EE+ E  K          MGFGLFD
Sbjct: 77  PAAAAGGEAAAEEQKEEAK--EEEESDEDMGFGLFD 110


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 105 LLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 254
           +L++  D   A++ E+IS IL  +      +W      AL G+N++D I+
Sbjct: 122 VLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 144 QLRQHHHQARMRAE*THANSAFDTIFS-FERASCRRP*LKREQARLS 7
           +LR    Q  +R +  H      TI +  ER SCRRP L  +  RL+
Sbjct: 203 KLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLT 249


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 38  GLRQLARSKLKMVSKAELACVYSAL 112
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 246 GHGH*CLPRLWRTDL 202
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,161
Number of Sequences: 5004
Number of extensions: 24810
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)