Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D09
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    64   8e-11
10_07_0100 + 12861588-12862601                                         28   3.7  
11_01_0340 + 2534998-2535660                                           27   6.4  
05_01_0555 + 4867494-4867577,4868987-4869607                           27   8.5  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 28/48 (58%), Positives = 37/48 (77%)
 Frame = +3

Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 266
           DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI ++GS
Sbjct: 17  DDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGS 64


>10_07_0100 + 12861588-12862601
          Length = 337

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 396 RSPCHRRTPRVPP 358
           R PCH +TPR PP
Sbjct: 210 RRPCHAKTPRTPP 222


>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 229 PSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSSQDESRVNTC 92
           P+ + ++     GS   AAA +  E  SP +++SSS     R ++C
Sbjct: 58  PTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSC 103


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 247 RSRTLMPSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSSQD 113
           R   +MP+ A+        ST   A F ++ ++ PVT +S S  D
Sbjct: 175 RVAAVMPAPAMRAAVWGMTSTVAVAGFYLLFVYRPVTISSYSEMD 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,674
Number of Sequences: 37544
Number of extensions: 184207
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)