Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D09
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   2e-16
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        34   0.057
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            29   2.8  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 41/95 (43%), Positives = 52/95 (54%)
 Frame = +3

Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSXXXXXXXXXXXX 302
           DDDVA+T +KI T++KAA + VEP+WPGLFAKAL+G N+ DLI + G+            
Sbjct: 18  DDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLILSAGA--PGAGGAVAAA 75

Query: 303 XXXXXXXXXXEEKXEXXKXXXXXXXXXXMGFGLFD 407
                     E+K E  K          MGFGLFD
Sbjct: 76  PAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 71  MVSKAELACVYSALIL 118
           M S +ELACVYSALIL
Sbjct: 1   MASTSELACVYSALIL 16


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 251 DQVTDIDAFQGFGEQTWPIWLYXYSRRFQDGGN 153
           DQ+  I+ F+  G++ WP +    S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 177 PPLSRWWKFSHQLRQ--HHHQARMRAE*THANSAFDTIFSFERASCRR 40
           PP  RWW++ H LRQ  H  Q + + + T         F +E  + R+
Sbjct: 394 PP--RWWRYRHVLRQMGHRRQGQSQIDVTEIPRPHALWFIYEHRNSRK 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,702,338
Number of Sequences: 59808
Number of extensions: 188518
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)