Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D09
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    80   1e-15
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    76   1e-14

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 34/48 (70%), Positives = 44/48 (91%)
 Frame = +3

Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 266
           DD+VA+TGEKI+T+LKAA V  EPYWPGLFAKALEG++V++LIT++ S
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSS 65



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 71  MVSKAELACVYSALIL 118
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 33/48 (68%), Positives = 43/48 (89%)
 Frame = +3

Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 266
           DD+VA+TGEKI+T+LKAA V  EP WPGLFAKALEG++V++LIT++ S
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSS 65



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 71  MVSKAELACVYSALIL 118
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,715,890
Number of Sequences: 27780
Number of extensions: 146678
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)