Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D09
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 64 4e-11
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 64 4e-11
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 61 4e-10
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 61 4e-10
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 61 4e-10
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 57 6e-09
At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family / ... 29 2.3
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 9.4
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 64.5 bits (150), Expect = 4e-11
Identities = 34/95 (35%), Positives = 45/95 (47%)
Frame = +3
Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSXXXXXXXXXXXX 302
D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+
Sbjct: 18 DEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAA 77
Query: 303 XXXXXXXXXXEEKXEXXKXXXXXXXXXXMGFGLFD 407
E K +GFGLFD
Sbjct: 78 PAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 64.5 bits (150), Expect = 4e-11
Identities = 34/95 (35%), Positives = 45/95 (47%)
Frame = +3
Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSXXXXXXXXXXXX 302
D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+
Sbjct: 18 DEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAA 77
Query: 303 XXXXXXXXXXEEKXEXXKXXXXXXXXXXMGFGLFD 407
E K +GFGLFD
Sbjct: 78 PAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 61.3 bits (142), Expect = 4e-10
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +3
Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 266
D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+
Sbjct: 18 DEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 61.3 bits (142), Expect = 4e-10
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +3
Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 266
D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+
Sbjct: 18 DEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 61.3 bits (142), Expect = 4e-10
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +3
Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 266
D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+
Sbjct: 18 DEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 57.2 bits (132), Expect = 6e-09
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 123 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 266
DD + +T E IS ++K A V VE YWP LFAK E N+ DLI N+G+
Sbjct: 17 DDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGA 64
>At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family /
NAGLU family contains Pfam profile: PF05089
alpha-N-acetylglucosaminidase (NAGLU)
Length = 806
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 72 WCQKLN*HVF--TLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRD 245
W + N H + L +WLDD + + + +S +LK V P + G AL I
Sbjct: 228 WARMGNLHAWGGPLSKNWLDDQLLLQKQILSRMLKFGMTPVLPSFSGNVPSALRKIYPEA 287
Query: 246 LITNI 260
IT +
Sbjct: 288 NITRL 292
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 223 KALANRPGQYGSTXTAAAFKMVEIFSPVTATS 128
+ +N P + S TAA KM +I SP+T +S
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSS 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,317,761
Number of Sequences: 28952
Number of extensions: 140023
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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