Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D08
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 90 1e-18
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 90 1e-18
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936... 31 0.55
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 31 0.97
03_01_0311 + 2453057-2454610 29 3.9
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676 28 6.8
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 27 9.0
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 90.2 bits (214), Expect = 1e-18
Identities = 37/92 (40%), Positives = 62/92 (67%)
Frame = +3
Query: 333 AGDQSSQLLSRPRLQELXXEVDPTVQLDEXVEEMLLQLADDFIDTTLNSACALAKHRHAP 512
AG ++LLS+ + EL ++DP+ +LD VE++L+ +A+DF+++ AC+LAKHR +
Sbjct: 156 AGGSGNRLLSKRSIHELVAQIDPSEKLDPEVEDVLIDIAEDFVESVATFACSLAKHRKSS 215
Query: 513 NVQLXDVQLHLXRQWNMWIPGFGNXELRPYKR 608
++ DV LH R WN+ +PGF E++ YK+
Sbjct: 216 ILEAKDVLLHAERSWNITLPGFSGDEIKLYKK 247
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 89.8 bits (213), Expect = 1e-18
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Frame = +3
Query: 201 QGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVG---QGGAGDQ----SSQLL 359
Q +Q + QSP++ S GS + G+Q G GG+ Q ++QLL
Sbjct: 346 QHILQQLQQQQQSPRI---SASGSQKSMNLTGSQPGTPLSGGTMTGGSASQGAEVTNQLL 402
Query: 360 SRPRLQELXXEVDPTVQLDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQL 539
+ ++Q+L +VDP ++D VE++LL++ADDFID+ AC LAKHR + ++ DV L
Sbjct: 403 GKRKIQDLVSQVDPLGKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAKDVLL 462
Query: 540 HLXRQWNMWIPGFGNXELRPYK 605
HL + W++ +PGF + P +
Sbjct: 463 HLEKNWHLSVPGFLREDKNPQR 484
>01_05_0532 -
22992520-22992879,22993323-22993403,22993565-22993639,
22994140-22994301
Length = 225
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +3
Query: 147 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 326
S N A ++ P+ G+ GQ + + P S Q +NT + S QS G
Sbjct: 126 SANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGS 185
Query: 327 GGAG 338
G G
Sbjct: 186 GNGG 189
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +3
Query: 198 GQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSP---MGTQSQVAKVGQGGAGDQSSQLLSR 365
G G + +P SP Q S + G P+ P A GG GD+S + R
Sbjct: 445 GTGTSKETRSPALSPPPQAASFKSGLPTDAFPGRLADNADHAAAAAAGGGGDKSEETTPR 504
Query: 366 PRLQEL 383
P+L+ L
Sbjct: 505 PKLKPL 510
>03_01_0311 + 2453057-2454610
Length = 517
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 267 GSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELXXEVDPT 404
G+P SP QS VA V +GG Q L +L+ L D T
Sbjct: 40 GAPPVSSPAARQSLVAVVSEGGEDSQRFLLEQEEQLRRLPSARDVT 85
>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
Length = 365
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 144 MSNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHS 287
+ + A A I TVG G+ Y+NN P NT Q +P Q++
Sbjct: 149 LGDEDTAAAHLSQCIFTVGMGSNDYLNNYFM-PAFYNTGSQYTPEQYA 195
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +3
Query: 174 NMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQ 353
N P+ VG IQY ++ Q P + G P S M + + G G QSS+
Sbjct: 155 NYPSTPGVGNAMIQYPSSQTQLPPTASAMRDGFPQAPSSMHIAPSLEQPHFGHDG-QSSK 213
Query: 354 LLSRPRLQEL 383
+ P Q L
Sbjct: 214 IAVDPSDQPL 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,925,070
Number of Sequences: 37544
Number of extensions: 215924
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -