Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D08
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            43   2e-04
SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)            38   0.009
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 31   0.75 
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  29   3.0  
SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_2011| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_39272| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 37/61 (60%)
 Frame = +3

Query: 339 DQSSQLLSRPRLQELXXEVDPTVQLDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNV 518
           D  S  LS P  ++L  EV+  + +   +  +LLQ+ADDFI+  +NS+  +AKHR +  +
Sbjct: 3   DHQSVCLSDPH-EQLGYEVEDVIDVSVHLS-LLLQVADDFIENVVNSSAQIAKHRKSNTL 60

Query: 519 Q 521
           +
Sbjct: 61  E 61



 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 541 IXNVSGTCGYQVLETMNCGHTRE 609
           + NV+GTCGY  LE  N G T++
Sbjct: 60  LENVAGTCGYPDLEQTNSGRTKK 82


>SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)
          Length = 90

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 15/37 (40%), Positives = 27/37 (72%)
 Frame = +3

Query: 342 QSSQLLSRPRLQELXXEVDPTVQLDEXVEEMLLQLAD 452
           Q +Q+L++ R+QEL  E+DP  Q+D+ VE++  ++ D
Sbjct: 12  QPTQVLTKRRIQELLHEIDPREQMDDEVEDLGYEVED 48


>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 180 PTIGTVGQGAIQYVNNPMQSPQLQN---TSIQGSP-SQHSPMGTQSQVAKVGQGGAGDQS 347
           P+I T G G+IQYV  P+  PQ        I  SP +Q S M T SQ   +     G + 
Sbjct: 542 PSIVTTGTGSIQYVIKPVIKPQSHRYLPMPISVSPGTQSSQMATSSQATVISTASGGIRY 601

Query: 348 SQLLSRP 368
           + L   P
Sbjct: 602 TSLTQSP 608


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 189 GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 305
           GT+   A QY+  PM SP     ++ GSP    P G QS
Sbjct: 164 GTMKSPAQQYLYTPMYSPTQSAPTLSGSPLTVIPPGPQS 202


>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 336 GDQSSQLLSRPRLQELXXEVDPTVQ-----LDEXVEEMLLQLADDFIDTTLNSACALAKH 500
           GD++SQ    P LQ L   V  TVQ     L E V  MLL++  D ++  L+S   L +H
Sbjct: 68  GDENSQ--RTPDLQSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEH 125

Query: 501 RH 506
            H
Sbjct: 126 IH 127


>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 147 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQ 302
           +NNSL Q AN P      +   Q  NNP+ +P+ +  +       + P G Q
Sbjct: 45  ANNSLTQQANNPLTQQANKSLTQQANNPL-TPKGKQPNQPTDQQPNKPTGQQ 95


>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 165 QAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGS----PSQHSPMGTQSQ 308
           Q    P   T  QG  Q  + P+Q  Q Q T  QG+    PSQ  P GTQ Q
Sbjct: 480 QQVIQPVWPTQPQGTQQQASQPIQPTQPQGTQQQGTLPIYPSQ--PQGTQQQ 529


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 396 DPTVQLDEXVEEMLLQLADDFIDTTLNSACAL 491
           D  V + E +E+  + +A   I TTLNS CA+
Sbjct: 449 DDRVAIHEAMEQQTISIAKAGITTTLNSRCAV 480


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
 Frame = +3

Query: 162 AQAANMPTI--GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS-QVAKVGQGG 332
           A+ A++P    G      +   ++P  S    +TSI GSP   SPM     + ++ G+  
Sbjct: 155 ARPASLPVSVPGVAMAATMTLADSPSSSHGSPHTSITGSPCP-SPMPRDDYEPSESGESE 213

Query: 333 AGDQSSQLLSRPRLQELXXEVDPTVQLDEXVEEMLLQLADD 455
             D   ++LS P+      +V+PT + D+  ++M  +L  D
Sbjct: 214 QDDSEVKMLSPPK------KVEPTAE-DQEFQQMFERLMVD 247


>SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -1

Query: 344 LVTSSALANFCYL*LGPHRAVLRRRTLNRSVLKLRTL--HGIIN 219
           ++ ++A++ +  + LG HR +  RRT + S+  L+T+  H +IN
Sbjct: 42  MIGATAISTYTLVLLGRHRDLHYRRTWDMSITLLKTIDTHHVIN 85


>SB_2011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 190 PIVGIFAACARELLDIYTFNTTKRENVTYKNDNRLNISKSP--R*VCQYEFIYFS 32
           P   +F+  A ELLD++     ++E   Y + N+L     P     C ++F YFS
Sbjct: 110 PKTVVFSESALELLDLHKAEIERQEFAQYFSGNKLLPGTRPASHCYCGHQFGYFS 164


>SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 397  TQQCSSMXKWRKCYCSLQMTSSTLH*IQLALLLSTGMH 510
            T  C+ +  W   YC+ ++T+  L   Q+ L L++G H
Sbjct: 961  TATCNCIRGWTGTYCNGKITTLALQTPQIYLPLTSGAH 998


>SB_39272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 427 RKCYCSLQMTSST----LH*IQLALLLSTGMHQMYN*XMCSYIXNVSGTCGYQVLETMNC 594
           R C C ++ TSS     LH   L L LS+G          S   +  G  G  +LET+N 
Sbjct: 5   RSC-CRVEATSSPFTRDLHCSPLTLPLSSGPSPWAQWLRQSQDLSGKGPTGLAILETLNI 63

Query: 595 GHTREQ 612
            H  EQ
Sbjct: 64  VHILEQ 69


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 189 GTVGQGAIQYVNNP--MQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGG 332
           GTVG    Q  + P  +Q    QN  +QG P    PMG  + +   G  G
Sbjct: 544 GTVGPRGPQGFSGPRGLQGTPGQN-GLQGPPGPQGPMGVNNSIGPPGPPG 592


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,754
Number of Sequences: 59808
Number of extensions: 252656
Number of successful extensions: 618
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)