Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D08
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription facto... 135 1e-31
U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein. 135 1e-31
D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein. 135 1e-31
BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II... 135 1e-31
BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein. 135 1e-31
AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II... 135 1e-31
AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II... 135 1e-31
U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein. 132 1e-30
AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform... 33 0.61
AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein... 33 0.61
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 30 5.7
BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein. 29 9.9
BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymer... 29 9.9
AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymer... 29 9.9
AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymer... 29 9.9
AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymer... 29 9.9
>X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription factor
TFTIID protein.
Length = 161
Score = 135 bits (326), Expect = 1e-31
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Frame = +3
Query: 255 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQ 410
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L EVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 411 LDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXE 590
LDE VEEMLLQ+ADDFI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 591 LRPYKRA 611
+RPYK+A
Sbjct: 136 IRPYKKA 142
>U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein.
Length = 161
Score = 135 bits (326), Expect = 1e-31
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Frame = +3
Query: 255 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQ 410
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L EVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 411 LDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXE 590
LDE VEEMLLQ+ADDFI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 591 LRPYKRA 611
+RPYK+A
Sbjct: 136 IRPYKKA 142
>D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein.
Length = 161
Score = 135 bits (326), Expect = 1e-31
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Frame = +3
Query: 255 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQ 410
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L EVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 411 LDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXE 590
LDE VEEMLLQ+ADDFI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 591 LRPYKRA 611
+RPYK+A
Sbjct: 136 IRPYKKA 142
>BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 135 bits (326), Expect = 1e-31
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Frame = +3
Query: 255 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQ 410
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L EVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 411 LDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXE 590
LDE VEEMLLQ+ADDFI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 591 LRPYKRA 611
+RPYK+A
Sbjct: 136 IRPYKKA 142
>BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein.
Length = 161
Score = 135 bits (326), Expect = 1e-31
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Frame = +3
Query: 255 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQ 410
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L EVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 411 LDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXE 590
LDE VEEMLLQ+ADDFI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 591 LRPYKRA 611
+RPYK+A
Sbjct: 136 IRPYKKA 142
>AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 135 bits (326), Expect = 1e-31
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Frame = +3
Query: 255 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQ 410
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L EVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 411 LDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXE 590
LDE VEEMLLQ+ADDFI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 591 LRPYKRA 611
+RPYK+A
Sbjct: 136 IRPYKKA 142
>AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding proteineudogene protein.
Length = 161
Score = 135 bits (326), Expect = 1e-31
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Frame = +3
Query: 255 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQ 410
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+L EVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 411 LDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXE 590
LDE VEEMLLQ+ADDFI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 591 LRPYKRA 611
+RPYK+A
Sbjct: 136 IRPYKKA 142
>U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein.
Length = 131
Score = 132 bits (318), Expect = 1e-30
Identities = 61/112 (54%), Positives = 84/112 (75%), Gaps = 5/112 (4%)
Frame = +3
Query: 291 MGTQSQVAKV-GQGGAGD----QSSQLLSRPRLQELXXEVDPTVQLDEXVEEMLLQLADD 455
M + V K+ G GAG +++Q+L++ +LQ+L EVDP QLDE VEEMLLQ+ADD
Sbjct: 1 MANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD 60
Query: 456 FIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNMWIPGFGNXELRPYKRA 611
FI++ + +AC LA+HR + +++ DVQLHL RQWNMWIPGFG+ E+RPYK+A
Sbjct: 61 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKA 112
>AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform
precursor protein.
Length = 1446
Score = 33.5 bits (73), Expect = 0.61
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 180 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 347
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 653 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 707
>AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein
protein.
Length = 1374
Score = 33.5 bits (73), Expect = 0.61
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 180 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 347
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 581 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 635
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 30.3 bits (65), Expect = 5.7
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 150 NNSLAQAANMPTI---GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKV 320
NN+ A A +PT+ T G+ QY N P+Q ++ QG+ Q P+ Q + +
Sbjct: 180 NNAAAYAGEVPTLLHAETYGRRP-QYSNPPVQGEVMEGADNQGAGEQGRPV-RQICIGDI 237
Query: 321 GQGGAGDQSSQLLSRPRLQELXXEVDPTVQLDE 419
AG LL++ + +E E D Q DE
Sbjct: 238 DHDSAG----ALLAKRQPREDGNEEDKENQGDE 266
>BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein.
Length = 212
Score = 29.5 bits (63), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 246 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 332
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 29.5 bits (63), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 246 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 332
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 29.5 bits (63), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 246 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 332
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 212
Score = 29.5 bits (63), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 246 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 332
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymerase
II transcription subunit MED8 protein.
Length = 268
Score = 29.5 bits (63), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 246 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 332
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 220 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 248
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,989,918
Number of Sequences: 237096
Number of extensions: 1138167
Number of successful extensions: 3276
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3276
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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