Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D08
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    29   3.5  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    29   3.5  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 31/117 (26%), Positives = 57/117 (48%)
 Frame = +3

Query: 213 QYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELXXE 392
           Q    P  S Q+Q   I     Q +P   Q   A V  G        ++ + +L +L  +
Sbjct: 189 QQHQQPPPSQQIQQPPIPQPQQQQAPP-PQMIPAAVPYGS-------IMEKSKLDDLMQQ 240

Query: 393 VDPTVQLDEXVEEMLLQLADDFIDTTLNSACALAKHRHAPNVQLXDVQLHLXRQWNM 563
           +  T  L+E V+++L++ ADDF+ + ++ AC + K+R    ++  D++  L   +NM
Sbjct: 241 ISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNREVKKIESRDIEFILKNVYNM 297


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 147 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 305
           S N     A  P+ G VG     + + P   P L    + GSP +  P+GT S
Sbjct: 366 SVNPAPAPAPTPSAGLVGSRKELFSSKP-SGPVLPKPQVNGSPKKWPPVGTTS 417


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +3

Query: 162 AQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSPMGTQSQVAKVGQGGAG 338
           AQ+ ++P  G  GQ   Q    P  SP       Q G+P Q  P G   Q    G  GA 
Sbjct: 213 AQSESIP--GAPGQAGPQGPPGPAGSPGAPGGPGQPGAPGQKGPSGAPGQPGADGNPGAP 270

Query: 339 DQSSQ 353
            Q  Q
Sbjct: 271 GQPGQ 275


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +3

Query: 327 GGAGDQSSQLLSRPRLQELXXEVDPTV--QLDEXVEEMLLQLADDFIDTTLNSACALAKH 500
           GG G +       P        V P V  ++ + ++EM LQ  D     T  +AC L   
Sbjct: 6   GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65

Query: 501 RHAPNVQLXDV 533
           +    V L D+
Sbjct: 66  QQKTKVHLVDI 76


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +3

Query: 327 GGAGDQSSQLLSRPRLQELXXEVDPTV--QLDEXVEEMLLQLADDFIDTTLNSACALAKH 500
           GG G +       P        V P V  ++ + ++EM LQ  D     T  +AC L   
Sbjct: 6   GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65

Query: 501 RHAPNVQLXDV 533
           +    V L D+
Sbjct: 66  QQKTKVHLVDI 76


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 396 DPTVQLDEXVEEMLLQLADDFIDTTLNSACAL 491
           D  V + E +E+  + +A   I TTLNS C++
Sbjct: 452 DDRVAIHEAMEQQTISIAKAGITTTLNSRCSV 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,172
Number of Sequences: 27780
Number of extensions: 192285
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)