Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D04
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 149 5e-37
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 47 3e-06
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 39 5e-04
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 3.1
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.2
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 9.5
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 149 bits (360), Expect = 5e-37
Identities = 75/146 (51%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Frame = +1
Query: 217 RTLLLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 396
R+ + + IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +F
Sbjct: 32 RSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVF 91
Query: 397 KILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVENXKAQLV 573
K+L KYRPET +P ++ G N V L+E KA+LV
Sbjct: 92 KLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLV 151
Query: 574 VIAHDVDPIELVLFLPALCRKMGVPY 651
+IA DVDPIELV+FLPALC+KMGVPY
Sbjct: 152 LIASDVDPIELVVFLPALCKKMGVPY 177
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 192 NPLFEKRPKNFAIGQ 236
NPLF RP++F IGQ
Sbjct: 24 NPLFVSRPRSFGIGQ 38
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
+R G N TK + ++ +V+A D +PIE++L LP LC VPY
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPY 77
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
I G V K V + LV++A D+ P++++ +P LC VPY
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -3
Query: 289 YTWAILQIWTSHELAEXP*PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFLGXX 110
Y W Q+ S E E +FF L + + GS + T NG+ + FFL
Sbjct: 428 YIW--FQLILSREFTEKSVSAHEFFSLEDVQHILLSYGSDYFTNNGSNPVMY--FFLLML 483
Query: 109 C 107
C
Sbjct: 484 C 484
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 307 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 408
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 535 LCLCRIGWC 509
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 291 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 380
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 489 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 319
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 379 TAKGLFKILEKYR 417
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 517 RSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKM 639
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 196 GFTIFLGSTFLTTNGAAATFFPTFFL 119
GFT+F+G TF N AA FL
Sbjct: 472 GFTVFVGHTFTAGNFIAAYITLPIFL 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,694
Number of Sequences: 5004
Number of extensions: 41464
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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