Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D04
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 9e-42
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 93 2e-19
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 47 1e-05
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 41 0.001
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 31 1.1
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 5.7
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 28 7.6
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 167 bits (405), Expect = 9e-42
Identities = 78/137 (56%), Positives = 95/137 (69%)
Frame = +1
Query: 241 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 420
IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRP
Sbjct: 45 IQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRP 104
Query: 421 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVENXKAQLVVIAHDVDPI 600
ET +P ++ G N +T LVEN KAQLVVIAHDVDPI
Sbjct: 105 ETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPI 164
Query: 601 ELVLFLPALCRKMGVPY 651
E+V++LPALCRKM VPY
Sbjct: 165 EIVVWLPALCRKMQVPY 181
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 192 NPLFEKRPKNFAIG 233
NPL EKRP+NF IG
Sbjct: 29 NPLIEKRPRNFGIG 42
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/87 (51%), Positives = 53/87 (60%)
Frame = +1
Query: 391 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVENXKAQL 570
LFK+L KYRPET +P ++ G N +T LVEN KAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 571 VVIAHDVDPIELVLFLPALCRKMGVPY 651
VVIAHDVDPIE+V++LPALCRKM VPY
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPY 90
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
+R G N TK + A+ +V+A D +P+E++L LP LC VPY
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPY 139
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 502 RPNTIRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
+ T+R G V K + + V++A DV PI+++ +P +C +PY
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPY 144
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 185 DRESSLREEAKELCYWSGXFSQLVT 259
DR ++ E KE+CYW F VT
Sbjct: 187 DRRKNMEERHKEMCYWGHKFETYVT 211
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 185 DRESSLREEAKELCYWSGXFSQLVT 259
DR ++ E KE+CYW F VT
Sbjct: 137 DRRKNMEERHKEMCYWGHKFETYVT 161
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 504 PLWWRLIFLGNLSFSSFPQPLFPG 433
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 523 GTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVP 648
G + K ++ +A L +++++ D V + ALC + G+P
Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIP 82
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 315 TSASSESAPSDQPIYPDTG 371
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 262 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 411
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,377
Number of Sequences: 59808
Number of extensions: 322972
Number of successful extensions: 835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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