Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D04
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 164 6e-41
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 152 2e-37
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 96 2e-20
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 75 3e-14
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.025
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.044
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 8.7
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 8.7
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 164 bits (398), Expect = 6e-41
Identities = 76/145 (52%), Positives = 98/145 (67%)
Frame = +1
Query: 217 RTLLLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 396
R + + IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ F
Sbjct: 38 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAF 97
Query: 397 KILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVENXKAQLVV 576
K+L+KYRPE+ RPNT+R G NT+T+LVE +AQLV+
Sbjct: 98 KLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVL 157
Query: 577 IAHDVDPIELVLFLPALCRKMGVPY 651
IAHDV+P+E+VL LPALCRK VPY
Sbjct: 158 IAHDVNPLEIVLHLPALCRKYNVPY 182
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 192 NPLFEKRPKNFAIGQ 236
NPLFEKR +NF IGQ
Sbjct: 30 NPLFEKRARNFNIGQ 44
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 152 bits (369), Expect = 2e-37
Identities = 76/145 (52%), Positives = 98/145 (67%)
Frame = +1
Query: 217 RTLLLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 396
R + + IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ F
Sbjct: 38 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAF 97
Query: 397 KILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVENXKAQLVV 576
K+L+KYRPE+ RPNT+R G NT+T+LVE +AQLV+
Sbjct: 98 KLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVETRRAQLVL 137
Query: 577 IAHDVDPIELVLFLPALCRKMGVPY 651
IAHDV+P+E+VL LPALCRK VPY
Sbjct: 138 IAHDVNPLEIVLHLPALCRKYNVPY 162
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 192 NPLFEKRPKNFAIGQ 236
NPLFEKR +NF IGQ
Sbjct: 30 NPLFEKRARNFNIGQ 44
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 95.9 bits (228), Expect = 2e-20
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +1
Query: 217 RTLLLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 396
R + + IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ F
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAF 200
Query: 397 KILEKYRPET 426
K+L+KYRPE+
Sbjct: 201 KLLDKYRPES 210
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 192 NPLFEKRPKNFAIGQ 236
NPLFEKR +NF IGQ
Sbjct: 133 NPLFEKRARNFNIGQ 147
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +1
Query: 217 RTLLLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
R + + IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 192 NPLFEKRPKNFAIGQ 236
NPLFEKR +NF IGQ
Sbjct: 133 NPLFEKRARNFNIGQ 147
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
++ G N TK + ++++V+A D +P+E++L LP LC VPY
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPY 80
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 468 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 349
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 511 TIRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
T+R G V K + + + ++A +V PI++ +P +C + +PY
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPY 114
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 341 LRSTNLPRHWTRLQLRA 391
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 537 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 406
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 537 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 406
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 537 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 406
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,146
Number of Sequences: 27780
Number of extensions: 239114
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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