Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D04
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 529 NTVTKLVENXKAQLVVIAHDVDPIELV 609
           N V KL++N K ++  I  +VD  E++
Sbjct: 560 NVVYKLIDNIKKEIYDILPEVDVEEIL 586


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = -3

Query: 277 ILQIWTSHELAEXP*PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFLGXXC--T 104
           I+ IWT + +     P+   +G F   GF       +LT       F  T F    C   
Sbjct: 166 IVLIWT-YTIPWALMPVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFVATIFTFSYCIPM 224

Query: 103 ILNSY*FSDL 74
           IL  Y +S +
Sbjct: 225 ILIIYYYSQI 234


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 232 PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL 119
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 492 STKEAQHHPIRHKHSH 539
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 232 PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL 119
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +1

Query: 226 LLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 366
           L++  ++   D + +    +  +    +  L+ ++ VPP I QF+ T
Sbjct: 545 LIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFT 591


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 319 EVQPSGAGCGYTWAILQIWTS 257
           ++ P   G GY   +L  WT+
Sbjct: 92  KIAPIFKGIGYATCVLSCWTN 112


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 319 EVQPSGAGCGYTWAILQIWTS 257
           ++ P   G GY   +L  WT+
Sbjct: 145 KIAPIFKGIGYATCVLSCWTN 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,548
Number of Sequences: 438
Number of extensions: 3031
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)