Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_D04
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 151 4e-37
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 151 5e-37
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 4e-04
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 5e-04
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 5e-04
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 41 6e-04
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 36 0.023
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 31 0.50
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 31 0.66
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 31 0.66
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 29 2.0
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 29 2.0
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 29 2.0
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.5
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 8.2
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 151 bits (366), Expect = 4e-37
Identities = 75/137 (54%), Positives = 92/137 (67%)
Frame = +1
Query: 241 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 420
+ P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRP
Sbjct: 36 LPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRP 95
Query: 421 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVENXKAQLVVIAHDVDPI 600
E +P ++ G N VT L+E KAQLVVIAHDVDPI
Sbjct: 96 E-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI 154
Query: 601 ELVLFLPALCRKMGVPY 651
ELV++LPALCRKM VPY
Sbjct: 155 ELVVWLPALCRKMEVPY 171
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 192 NPLFEKRPKNFAIG 233
NPLFE+RPK F IG
Sbjct: 20 NPLFERRPKQFGIG 33
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 151 bits (365), Expect = 5e-37
Identities = 74/137 (54%), Positives = 92/137 (67%)
Frame = +1
Query: 241 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 420
+ P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRP
Sbjct: 37 LPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRP 96
Query: 421 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVENXKAQLVVIAHDVDPI 600
E +P ++ G N VT L+E KAQLVVIAHDVDPI
Sbjct: 97 E-DKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI 155
Query: 601 ELVLFLPALCRKMGVPY 651
ELV++LPALCRKM VPY
Sbjct: 156 ELVVWLPALCRKMEVPY 172
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 192 NPLFEKRPKNFAIG 233
NPLFE+RPK F IG
Sbjct: 21 NPLFERRPKQFGIG 34
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
++ G V K + + L VIA ++ PI+++ LP LC + GVPY
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPY 96
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
++ G N TK + ++ VV+A D +P+E++L LP L VPY
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPY 80
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
++ G N TK + ++ VV+A D +P+E++L LP L VPY
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPY 80
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 41.1 bits (92), Expect = 6e-04
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 514 IRSGTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
++ G N TK + ++ +V+A D +P+E++L LP L VPY
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPY 80
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 532 TVTKLVENXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 651
+ TK + ++ VV+A D +P+E++L LP L VPY
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPY 112
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 645 YTHFTA*RWQEENQLNRINIMSDDHKLRLXVLDQLGDCVC 526
YTH+ RW E NQ +R+ MSD K + L QL D C
Sbjct: 340 YTHYYV-RWVE-NQSSRLKAMSDLEKFQSVQLKQLSDNQC 377
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 523 GTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALC 630
G + KL+E AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 523 GTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALC 630
G + KL+E AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 523 GTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALC 630
G + KL+E AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 523 GTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALC 630
G + KL+E AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 523 GTNTVTKLVENXKAQLVVIAHDVDPIELVLFLPALC 630
G + KL+E AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 519 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 361
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 480 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 385
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,592
Number of Sequences: 28952
Number of extensions: 231484
Number of successful extensions: 628
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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